Test data used in github actions for stjudecab's bioinformatics pipelines
This repository serves as a centralized testing datasets for our stjudecab's Nextflow-based bioinformatics pipelines.
Each branch is dedicated to a specific pipeline, containing all necessary files for comprehensive testing
and infrastructure validation (e.g., conda, docker and singularity).
Due to the large size of test datasets, we recommend cloning only the specific branch(es) you need:
# Clone a single pipeline branch
git clone <url> --single-branch --branch <pipeline/branch_name>To add another pipeline branch to your local repository later:
git remote set-branches --add origin <remote-branch>
git fetch
git checkout <remote-branch>If you encounter any issues or have questions about testing specific pipelines, please submit an issue through our GitHub Issues page.
To contribute new test datasets or improve existing tests, please follow our standard pull request process targeting the appropriate pipeline branch.