Fix combine step with many sc files #74
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Using find and xargs
adthrasher
requested changes
Aug 11, 2021
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Thank you for your contribution. I don't think the sort would match with the provided change. I think you would need to do something like find $CICERO_DATADIR/$SAMPLE/*/ -type f -name 'unfiltered.fusion.txt' -print0 | sort -zV | xargs -0 cat | sort -k 9,9 -k 10,10n -k 11,11n to get the file contents sorted. My suggested change is to do the cat of each file as part of the find command and then sort the content directly.
Co-authored-by: Andrew Thrasher <adthrasher@gmail.com>
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Using find and xargs
Fixes #73