An interface to the Integrated Taxonomic Information System (ITIS)
accepted_namesany_match_countcomment_detailcommon_namescore_metadatacoveragecredibility_ratingcredibility_ratingscurrencydate_datadescriptionexpertsfull_recordgeographic_divisionsgeographic_valuesglobal_species_completenesshierarchy_downhierarchy_fullhierarchy_upitis_facetitis_groupitis_highlightitis_searchjurisdiction_origin_valuesjurisdiction_valuesjurisdictional_originkingdom_namekingdom_nameslast_change_datelsid2tsnother_sourcesparent_tsnpublicationsrank_namerank_namesrecordreview_yearscientific_namesearch_any_match_pagedsearch_anymatchsearch_commonsearch_scientificsynonym_namestaxon_authorshiptermstsn_by_vernacular_languagetsn2lsidunacceptability_reasonusagevernacular_languages
Stable, CRAN version
install.packages("ritis")Dev version
devtools::install_github("ropensci/ritis")library("ritis")matches only monomials
itis_search(q = "nameWOInd:/[A-Za-z0-9]*[ ]{0,0}*/")
#> # A tibble: 10 x 20
#> tsn nameWInd nameWOInd unit1 usage credibilityRati… completenessRat…
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 1348… Phthiri… Phthirii… Phth… valid No review; untr… unknown
#> 2 1348… Phthiria Phthiria Phth… valid No review; untr… unknown
#> 3 1348… Poecilo… Poecilog… Poec… valid No review; untr… unknown
#> 4 1348… Neacreo… Neacreot… Ne
8000
ac… valid No review; untr… unknown
#> 5 1348… Geronin… Geroninae Gero… valid No review; untr… unknown
#> 6 1348… Geron Geron Geron valid No review; untr… unknown
#> 7 1349… Cythere… Cytherei… Cyth… valid No review; untr… unknown
#> 8 1349… Pantarb… Pantarbes Pant… valid No review; untr… unknown
#> 9 1349… Tomomyz… Tomomyzi… Tomo… valid No review; untr… unknown
#> 10 1349… Amphico… Amphicos… Amph… valid No review; untr… unknown
#> # … with 13 more variables: currencyRating <chr>, kingdom <chr>,
#> # parentTSN <chr>, rankID <chr>, rank <chr>, hierarchySoFar <chr>,
#> # hierarchySoFarWRanks <chr>, hierarchyTSN <chr>, otherSource <chr>,
#> # createDate <chr>, updateDate <chr>, hierarchicalSort <chr>,
#> # `_version_` <dbl>matches only binomials
itis_search(q = "nameWOInd:/[A-Za-z0-9]*[ ]{1,1}[A-Za-z0-9]*/")
#> # A tibble: 10 x 24
#> tsn nameWInd nameWOInd unit1 unit2 usage unacceptReason
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 1347… Rhabdop… Rhabdops… Rhab… mus inva… junior synonym
#> 2 1347… Apolysi… Apolysis… Apol… neut… valid <NA>
#> 3 1347… Pseudog… Pseudoge… Pseu… neut… inva… junior synonym
#> 4 1347… Apolysi… Apolysis… Apol… nigr… valid <NA>
#> 5 1347… Oligodr… Oligodra… Olig… nigr… inva… junior synonym
#> 6 1347… Apolysi… Apolysis… Apol… obsc… valid <NA>
#> 7 1347… Pseudog… Pseudoge… Pseu… obsc… inva… junior synonym
#> 8 1347… Apolysi… Apolysis… Apol… palp… valid <NA>
#> 9 1347… Oligodr… Oligodra… Olig… palp… inva… junior synonym
#> 10 1347… Apolysi… Apolysis… Apol… pann… valid <NA>
#> # … with 17 more variables: credibilityRating <chr>, taxonAuthor <chr>,
#> # kingdom <chr>, rankID <chr>, rank <chr>, hierarchySoFar <chr>,
#> # hierarchySoFarWRanks <chr>, hierarchyTSN <chr>, synonyms <chr>,
#> # synonymTSNs <chr>, otherSource <chr>, acceptedTSN <chr>,
#> # createDate <chr>, updateDate <chr>, `_version_` <dbl>,
#> # parentTSN <chr>, hierarchicalSort <chr>Get accepted names for a TSN
accepted_names(tsn = 504239)
#> # A tibble: 1 x 3
#> acceptedName acceptedTsn author
#> <chr> <chr> <chr>
#> 1 Dasiphora fruticosa 836659 (L.) Rydb.Get common names for a TSN
common_names(tsn = 183833)
#> # A tibble: 3 x 3
#> commonName language tsn
#> <chr> <chr> <chr>
#> 1 African hunting dog English 183833
#> 2 African Wild Dog English 183833
#> 3 Painted Hunting Dog English 183833Full hierarchy for a TSN
hierarchy_full(tsn = 37906)
#> # A tibble: 60 x 5
#> parentname parenttsn rankname taxonname tsn
#> <chr> <chr> <chr> <chr> <chr>
#> 1 "" "" Kingdom Plantae 202422
#> 2 Plantae 202422 Subkingdom Viridiplantae 954898
#> 3 Viridiplantae 954898 Infrakingdom Streptophyta 846494
#> 4 Streptophyta 846494 Superdivision Embryophyta 954900
#> 5 Embryophyta 954900 Division Tracheophyta 846496
#> 6 Tracheophyta 846496 Subdivision Spermatophytina 846504
#> 7 Spermatophytina 846504 Class Magnoliopsida 18063
#> 8 Magnoliopsida 18063 Superorder Asteranae 846535
#> 9 Asteranae 846535 Order Asterales 35419
#> 10 Asterales 35419 Family Asteraceae 35420
#> # … with 50 more rows- Please report any issues or bugs.
- License: MIT
- Get citation information for
ritisin R doingcitation(package = 'ritis') - Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.
