3D SDF generation from csv file #2453

sbhakat · 2019-05-17T12:05:46Z

I am new to RDKit and trying to generate a SDF file from a .csv file containing >1000 SMILES. The .csv file looks something like following (each line is one SMILE):

O1CC[C@@H](NC(=O)[C@@H](Cc2cc3cc(ccc3nc2N)-c2ccccc2C)C)CC1(C)C
Fc1cc(cc(F)c1)C[C@H](NC(=O)[C@@H](N1CC[C@](NC(=O)C)(CC(C)C)C1=O)CCc1ccccc1)[C@H](O)[C@@H]1[NH2+]C[C@H](OCCC)C1
S1(=O)(=O)N(c2cc(cc3c2n(cc3CC)CC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(OC)ccc1)Cc1ccccc1)C
S1(=O)(=O)C[C@@H](Cc2cc(O[C@H](COCC)C(F)(F)F)c(N)c(F)c2)[C@H](O)[C@@H]([NH2+]Cc2cc(ccc2)C(C)(C)C)C1
S1(=O)(=O)N(c2cc(cc3c2n(cc3CC)CC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(ccc1)C(F)(F)F)Cc1ccccc1)C

I generated the 2D SDF file using the following script

import pandas as pd
from rdkit.Chem import PandasTools
pp = pd.read_csv('only_smile.csv', names=['Smiles'])                 
PandasTools.AddMoleculeColumnToFrame(pp,'Smiles')           
PandasTools.WriteSDF(pp, 'pp_out.sdf')

I want to add hydrogens and want to generated 3D SDF file for the same. Any help?

The text was updated successfully, but these errors were encountered:

lilleswing · 2019-05-17T13:56:33Z

pp['Smiles'] = [Chem.AddHs(x) for x in pp['Smiles'].values.tolist()]
PandasTools.WriteSDF(pp, 'pp_out.sdf')
``

sbhakat · 2019-05-18T09:16:19Z

@lilleswing I got an error like following

>>> from rdkit import Chem
>>> pp['Smiles'] = [Chem.AddHs(x) for x in pp['Smiles'].values.tolist()]
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "<stdin>", line 1, in <listcomp>
Boost.Python.ArgumentError: Python argument types in
    rdkit.Chem.rdmolops.AddHs(str)
did not match C++ signature:
    AddHs(RDKit::ROMol mol, bool explicitOnly=False, bool addCoords=False, boost::python::api::object  bool addResidueInfo=False)

any help?

CKannas · 2019-05-18T11:52:13Z

Hi, By default PandasTools.AddMoleculeColumnToFrame() create a column named "ROMol". (http://www.rdkit.org/docs/source/rdkit.Chem.PandasTools.html) To add hydrogens the line should be changed to: pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()] For you to calculate 3D coords look at this http://www.rdkit.org/docs/GettingStartedInPython.html#working-with-3d-molecules . I would advise to create a function that takes input one molecule, performs the steps listed above and then returns the new molecule object. With pandas you can apply/map this function to the column with the RDKit Molecule objects and you can store the result in a column of your choice. Then you just use PandasTools functionality to write the dataframe in SDF. Regards, Christos Christos Kannas Scientific Software Developer (Cheminformatics) [image: View Christos Kannas's profile on LinkedIn] <http://cy.linkedin.com/in/christoskannas>

…

On Sat, 18 May 2019 at 10:16, sbhakat ***@***.***> wrote: @lilleswing <https://github.com/lilleswing> I got an error like following >>> from rdkit import Chem >>> pp['Smiles'] = [Chem.AddHs(x) for x in pp['Smiles'].values.tolist()] Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<stdin>", line 1, in <listcomp> Boost.Python.ArgumentError: Python argument types in rdkit.Chem.rdmolops.AddHs(str) did not match C++ signature: AddHs(RDKit::ROMol mol, bool explicitOnly=False, bool addCoords=False, boost::python::api::object bool addResidueInfo=False) any help? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2453?email_source=notifications&email_token=AA4P6SSJTWPX7YTAMEYO3YTPV7CONA5CNFSM4HNUV7J2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODVWK5NA#issuecomment-493661876>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA4P6SWAQ5ELKUYHG7XVVATPV7CONANCNFSM4HNUV7JQ> .

sbhakat · 2019-05-20T18:53:05Z

@CKannas got an error like

>>> pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()]
Traceback (most recent call last):
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3078, in get_loc
    return self._engine.get_loc(key)
  File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'ROMol'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2688, in __getitem__
    return self._getitem_column(key)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2695, in _getitem_column
    return self._get_item_cache(key)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/generic.py", line 2489, in _get_item_cache
    values = self._data.get(item)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/internals.py", line 4115, in get
    loc = self.items.get_loc(item)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc
    return self._engine.get_loc(self._maybe_cast_indexer(key))
  File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'ROMol'

Any help?

CKannas · 2019-05-21T09:03:27Z

Hi, Could you share your code / jupyter notebook? Best, Christos Christos Kannas Scientific Software Developer (Cheminformatics) [image: View Christos Kannas's profile on LinkedIn] <http://cy.linkedin.com/in/christoskannas>

…

On Mon, 20 May 2019 at 19:53, sbhakat ***@***.***> wrote: @CKannas <https://github.com/CKannas> got an error like >>> pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()] Traceback (most recent call last): File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3078, in get_loc return self._engine.get_loc(key) File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'ROMol' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2688, in __getitem__ return self._getitem_column(key) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2695, in _getitem_column return self._get_item_cache(key) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/generic.py", line 2489, in _get_item_cache values = self._data.get(item) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/internals.py", line 4115, in get loc = self.items.get_loc(item) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc return self._engine.get_loc(self._maybe_cast_indexer(key)) File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'ROMol' Any help? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2453?email_source=notifications&email_token=AA4P6SSFE5GIBCS4PT7IF7DPWLXRJA5CNFSM4HNUV7J2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODVZX52Q#issuecomment-494108394>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA4P6SUQBVWB2V456ZRQZKDPWLXRJANCNFSM4HNUV7JQ> .

CKannas · 2019-05-21T09:05:46Z

Hi, The error shows that your dataframe doesn't have a column named "ROMol". You need to make sure that you use the column that has the RDKit Molecules. Best, Christos Christos Kannas Scientific Software Developer (Cheminformatics) [image: View Christos Kannas's profile on LinkedIn] <http://cy.linkedin.com/in/christoskannas>

…

On Mon, 20 May 2019 at 19:53, sbhakat ***@***.***> wrote: @CKannas <https://github.com/CKannas> got an error like >>> pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()] Traceback (most recent call last): File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3078, in get_loc return self._engine.get_loc(key) File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'ROMol' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2688, in __getitem__ return self._getitem_column(key) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2695, in _getitem_column return self._get_item_cache(key) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/generic.py", line 2489, in _get_item_cache values = self._data.get(item) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/internals.py", line 4115, in get loc = self.items.get_loc(item) File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc return self._engine.get_loc(self._maybe_cast_indexer(key)) File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item 8000 File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item KeyError: 'ROMol' Any help? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2453?email_source=notifications&email_token=AA4P6SSFE5GIBCS4PT7IF7DPWLXRJA5CNFSM4HNUV7J2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODVZX52Q#issuecomment-494108394>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA4P6SUQBVWB2V456ZRQZKDPWLXRJANCNFSM4HNUV7JQ> .

sbhakat · 2019-05-21T19:06:23Z

Here is the full script which I am trying to execute

import pandas as pd
from rdkit.Chem import PandasTools
from rdkit import Chem
from rdkit import RDConfig
pp = pd.read_csv('only_smile.csv', names=['Smiles']) 
pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()]                
PandasTools.AddMoleculeColumnToFrame(pp,'Smiles')           
PandasTools.WriteSDF(pp, 'pp_out.sdf')

The only_smile.csv contains SMILES in each line something as mentioned before.

CKannas · 2019-05-21T20:29:07Z

Check this gist https://gist.github.com/CKannas/5ead64ea673388daedc60de8ef041e28 Christos Christos Kannas Scientific Software Developer (Cheminformatics) [image: View Christos Kannas's profile on LinkedIn] <http://cy.linkedin.com/in/christoskannas>

…

On Tue, 21 May 2019 at 20:06, sbhakat ***@***.***> wrote: Here is the full script which I am trying to execute import pandas as pd from rdkit.Chem import PandasTools from rdkit import Chem from rdkit import RDConfig pp = pd.read_csv('only_smile.csv', names=['Smiles']) pp['ROMol'] = [Chem.AddHs(x) for x in pp['ROMol'].values.tolist()] PandasTools.AddMoleculeColumnToFrame(pp,'Smiles') PandasTools.WriteSDF(pp, 'pp_out.sdf') The only_smile.csv contains SMILES in each line something as mentioned before. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2453?email_source=notifications&email_token=AA4P6SQO3JJ7LOJH3COKRU3PWRB3FA5CNFSM4HNUV7J2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODV44BBQ#issuecomment-494518406>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA4P6SVZKYITSNY3GFQ2EJ3PWRB3FANCNFSM4HNUV7JQ> .

sbhakat · 2019-05-22T17:37:51Z

Here is my try


>>> import pandas as pd
>>> import rdkit
>>> from rdkit import Chem
>>> from rdkit.Chem import AllChem
>>> from rdkit.Chem import PandasTools
>>> 
>>> print(rdkit.rdBase.rdkitVersion)
2018.09.1
>>> smiles_file = "./only_smile.csv"
>>> world_drugs = pd.read_csv(smiles_file)
>>> print(len(world_drugs))
1512
>>> 
>>> 
>>> world_drugs.head(2)
                                                   O1CC[C@@H](NC(=O)[C@@H](Cc2cc3cc(ccc3nc2N)-c2ccccc2C)C)CC1(C)C
0  Fc1cc(cc(F)c1)C[C@H](NC(=O)[C@@H](N1CC[C@](NC(=O)C)(CC(C)C)C1=O)CCc1ccccc1)[C@H](O)[C@@H]1[NH2+]C[C@H](OCCC)C1
1                          S1(=O)(=O)N(c2cc(cc3c2n(cc3CC)CC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(OC)ccc1)Cc1ccccc1)C
>>> 
>>> PandasTools.AddMoleculeColumnToFrame(world_drugs, "smiles")

Got an error like

Traceback (most recent call last):
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3078, in get_loc
    return self._engine.get_loc(key)
  File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 162, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'Smiles'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/rdkit/Chem/PandasTools.py", line 299, in AddMoleculeColumnToFrame
    frame[molCol] = frame[smilesCol].map(Chem.MolFromSmiles)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2688, in __getitem__
    return self._getitem_column(key)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/frame.py", line 2695, in _getitem_column
    return self._get_item_cache(key)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/generic.py", line 2489, in _get_item_cache
    values = self._data.get(item)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/internals.py", line 4115, in get
    loc = self.items.get_loc(item)
  File "/home/sbhakat/miniconda2/envs/rdkit/lib/python3.6/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc
    return self._engine.get_loc(self._maybe_cast_indexer(key))
  File "pandas/_libs/index.pyx", line 140, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 162, in pandas._libs.in
8000
dex.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1492, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1500, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'Smiles'

My .csv file has no header or anything it is just like following

O1CC[C@@H](NC(=O)[C@@H](Cc2cc3cc(ccc3nc2N)-c2ccccc2C)C)CC1(C)C
Fc1cc(cc(F)c1)C[C@H](NC(=O)[C@@H](N1CC[C@](NC(=O)C)(CC(C)C)C1=O)CCc1ccccc1)[C@H](O)[C@@H]1[NH2+]C[C@H](OCCC)C1
S1(=O)(=O)N(c2cc(cc3c2n(cc3CC)CC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(OC)ccc1)Cc1ccccc1)C
S1(=O)(=O)C[C@@H](Cc2cc(O[C@H](COCC)C(F)(F)F)c(N)c(F)c2)[C@H](O)[C@@H]([NH2+]Cc2cc(ccc2)C(C)(C)C)C1
S1(=O)(=O)N(c2cc(cc3c2n(cc3CC)CC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(ccc1)C(F)(F)F)Cc1ccccc1)C
S1(=O)C[C@@H](Cc2cc(OC(C(F)(F)F)C(F)(F)F)c(N)c(F)c2)[C@H](O)[C@@H]([NH2+]Cc2cc(ccc2)C(C)(C)C)C1
S(=O)(=O)(CCCCC)C[C@@H](NC(=O)c1cccnc1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(ccc1)CC)Cc1cc(F)cc(F)c1
Fc1c2c(ccc1)[C@@]([NH+]=C2N)(C=1C=C(C)C(=O)N(C=1)CC)c1cc(ccc1)-c1cc(cnc1)C#CC
O1c2c(cc(cc2)CC)[C@@H]([NH2+]C[C@@H](O)[C@H]2NC(=O)C=3C=CC(=O)N(CCCCc4cc(C2)ccc4)C=3)CC12CCC2
O=C1N(CCCC1)C(C)(C)[C@@H]1C[C@@H](CCC1)C(=O)N[C@H]([C@H](O)C[NH2+]Cc1cc(ccc1)C(C)C)Cc1ccccc1

pgg1610 · 2020-07-31T18:13:33Z

One way to solve this is to have pp dataframe explicitly mention SMILES as the key:

df = pd.read_csv(PATH_CSV, names=['SMILES']) #Add more column names here as per your csv 
PandasTools.AddMoleculeColumnToFrame(df, "SMILES") #This add the ROMol column with the molecular representation
df["Mol_H"] = df["ROMol"].apply(Chem.AddHs)
Chem.PandasTools.WriteSDF(df,'{}/SDF_File.sdf'.format(source_csv_dir), idName=None, properties=list(df.columns), allNumeric=False)

mainguyenanhvu · 2024-07-24T09:15:33Z

@pgg1610 thank you for your solution. I would like to ask you a question that is how to speed up (or parallel) process? This is because I have a lot of smiles.

mainguyenanhvu · 2024-07-25T11:04:56Z

I don't know why this error happed after I re-run:
I face the error:

PandasTools.WriteSDF(pp, args.output_file, molColName='ID', properties=list(pp.columns))
  File "/scratch/micromamba/envs/biotools_py39/lib/python3.9/site-packages/rdkit/Chem/PandasTools.py", line 440, in WriteSDF
    mol = Chem.Mol(row[1][molColName])
RuntimeError: Bad pickle format: unexpected End-of-File while reading

I updated pandas == 2.0.0 as here but it still errored.

Please help me to solve it.

My code here:

import pandas as pd
from pprint import pprint
from rdkit.Chem import PandasTools
from rdkit import Chem
from rdkit.Chem import AllChem

pp = pd.read_csv(args.input_file)
PandasTools.AddMoleculeColumnToFrame(pp,'smiles')
pp["Mol_H"] = pp["ROMol"].apply(Chem.AddHs)
pp["Mol_H"].map(AllChem.EmbedMolecule)
pprint(pp)
PandasTools.WriteSDF(pp, args.output_file, molColName='ID', properties=list(pp.columns))

Another error:

PandasTools.WriteSDF(pp, args.output_file, molColName='ID', properties=list(pp.columns))
  File "/scratch/micromamba/envs/biotools_py39/lib/python3.9/site-packages/rdkit/Chem/PandasTools.py", line 440, in WriteSDF
    mol = Chem.Mol(row[1][molColName])
RuntimeError: Bad pickle format: bad endian ID or invalid file format

mainguyenanhvu · 2024-07-25T14:11:29Z

Change to PandasTools.WriteSDF(df, args.output_file, idName='AQID', properties=list(df.columns)) to fix this error.

github-actions · 2024-12-05T02:50:24Z

This issue was marked as stale because it has been open for 90 days with no activity.

github-actions · 2024-12-20T02:36:38Z

This issue was closed because it has been inactive for 14 days since being marked as stale.

github-actions bot added the stale label Dec 5, 2024

github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Dec 20, 2024

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