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Starred repositories

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Chat With All Kinds of AI Models Through a Common Interface

R 135 10 Updated Feb 17, 2025

Shiny app to easily create publishable plots for scientific papers

R 1 Updated Nov 29, 2024

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Jupyter Notebook 178 55 Updated Jul 30, 2024
2 Updated Feb 4, 2025

A curated list of resources for using LLMs to develop more competitive grant applications.

Python 3,560 459 Updated Mar 1, 2024

Neo4j graph construction from unstructured data using LLMs

Jupyter Notebook 3,565 605 Updated Jun 5, 2025

Web platform for easily managing, curating, and sharing FAIR and AI-ready clinical and biomedical research data

Vue 7 3 Updated Jun 9, 2025
Jupyter Notebook 1,253 261 Updated Mar 31, 2025

R-package for structural equation modeling based on GWAS summary data

R 231 58 Updated Jun 9, 2025

bioBakery tools for meta'omic profiling

HTML 278 76 Updated Jun 3, 2025
HTML 166 34 Updated Sep 18, 2024

PyGWalker: Turn your dataframe into an interactive UI for visual analysis

Python 14,914 796 Updated May 22, 2025

Running large language models like OPT-175B/GPT-3 on a single GPU. Focusing on high-throughput generation.

Python 1 Updated Mar 1, 2023

A single-cell RNA-seq imputation method using an autoencoder constrained by bulk RNA-seq data

R 1 Updated Oct 25, 2022

BamDeal: a comprehensive toolkit for bam manipulation

C++ 53 20 Updated Dec 21, 2022

A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.

R 10 1 Updated Aug 25, 2022

GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted with CpG island features.

R 9 3 Updated Nov 18, 2023

Hopsworks - Data-Intensive AI platform with a Feature Store

Java 1,226 151 Updated Feb 10, 2025

🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

TeX 4,394 6,441 Updated Jun 8, 2025

Repository for the GA4GH phenopacket schema

Java 87 31 Updated Sep 19, 2024

Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries

Jupyter Notebook 30 11 Updated Mar 15, 2020

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Scala 1,019 367 Updated Jun 9, 2025

Scalable identity resolution, entity resolution, data mastering and deduplication using ML

Java 1,040 125 Updated Jun 10, 2025

A repository with details related to our hackathon including a list of projects, resources, and our goals.

3 Updated Aug 22, 2024
R 19 2 Updated Jul 17, 2023

Epidemiology for Bioinformaticians Workshop 2022

Dockerfile 3 Updated May 16, 2022

Neural networks for microbe-metabolite interaction analysis

Python 120 52 Updated Nov 4, 2022

code to run sei and obtain sei and sequence class predictions

Python 105 7 Updated Dec 20, 2022

curami version 2: curation of BioSamples objects

JavaScript 1 Updated Feb 15, 2023
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