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MERlin Public
Forked from emanuega/MERlinMERFISH Decoding Pipeline
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SnapATAC Public
Analysis Pipeline for Single Cell ATAC-seq
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cellpose Public
Forked from MouseLand/cellposea generalist algorithm for cellular segmentation
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 13, 2021 -
merfish_designer Public
Forked from xingjiepan/MERFISH_probe_designA python3 pipeline for MERFISH probe design.
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am_geneBasis Public
Forked from MarioniLab/am_geneBasisprediction of marker genes for cell typing and spatial gradients from scRNA-seq
Jupyter Notebook UpdatedOct 18, 2021 -
gcsfuse Public
Forked from GoogleCloudPlatform/gcsfuseA user-space file system for interacting with Google Cloud Storage
Go Apache License 2.0 UpdatedSep 21, 2020 -
SnapTools Public
A module for working with snap files in Python
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merlin-parameters-example Public
Forked from emanuega/merlin-parameters-exampleExample MERlin analysis parameters for processing MERFISH data
UpdatedOct 3, 2019 -
subpixal Public
Forked from spacetelescope/subpixalSubpixel cross-correlation image alignment of astronomical images
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 30, 2019 -
snATAC Public
<<------ Use SnapATAC!!
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CRESTseq Public
CREST-seq peak calling.
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TaFuCo Public
Targeted Fusion Caller (C)
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