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v2.2.7

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Add MMseqs2 sequence search

v2.2.6

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Only check user species tree for required species, resolved davidemms…

…#163

v2.2.3

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Prevent accidental inclusion of duplicate species, resolves davidemms#91

2.2.1

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Convert IDs correctly handels support values, node labels, none

2.2.0

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Correct formatting of putatitve horizontal transfer genes

2.1.2

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Refactor code: orthogroups for species tree inference

2.0.0-beta

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Change imports

1.1.10

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Move tree/alignment results files created by user-specified software …

…if required, resolves davidemms#106

Some tree programs such as RAxML and IQTree do not allow the user to specify the filename for the results tree. For these programs, move the results file to the required filename afterwards.

1.1.8

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Update manual

1.1.4

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Update help
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