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@popgenmethods

popgenmethods

Statistical methods for population genetic analysis

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  1. smcpp smcpp Public

    SMC++ infers population history from whole-genome sequence data.

    C++ 168 35

  2. momi2 momi2 Public

    Infer demographic history with the Moran model

    Python 47 11

  3. pyrho pyrho Public

    Fast inference of fine-scale recombination rates based on fused-LASSO

    Python 51 6

  4. SINGER SINGER Public

    Sampling and inference of genealogies with recombination

    C++ 29 5

  5. lecture_notes lecture_notes Public

    Lecture Notes on Computational and Mathematical Population Genetics

    191 15

  6. LDhelmet LDhelmet Public

    Software package for estimating fine-scale recombination rate.

    C++ 14 1

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