Stars
Symmetric DUST for finding low-complexity regions in DNA sequences
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Programmable completion functions for bash
order a FASTA file by microchromosome specific genes
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Workflow to identify the centromere dip regions (CDR) from methyl BAMs
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…
Reference implementations of minimizer schemes to go with the mod-minimizers paper.
Documentation and tutorials on using AWS for biomedical research
Documentation and tutorials on using GCP for biomedical research
A repository to conduct experiments with omnitig-related models for genome assembly.
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
CrossMap is a python program to lift over genome coordinates from one genome version to another.
Earl Grey: A fully automated TE curation and annotation pipeline
Transformer-based sequence correction method for genome assembly polishing
Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics
Applied Computational Genomics Course at UU: Spring 2020