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Starred repositories

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MicroED data processing scripts and tutorials

Python 2 Updated Mar 11, 2025

Containerization is a Swift package for running Linux containers on macOS.

Swift 6,645 139 Updated Jun 14, 2025

StarDist - Object Detection with Star-convex Shapes

Python 1,051 241 Updated May 30, 2025

cryo-EM tomogram simulator

MATLAB 26 4 Updated Jun 12, 2025

A python program for generating fake WB image. The project is intended to mock the ease with which life science results can be falsified.

3 1 Updated Nov 11, 2021

GPU-accelerated template matching for cryo-ET

Python 40 13 Updated Jun 4, 2025

A text-to-speech (TTS), speech-to-text (STT) and speech-to-speech (STS) library built on Apple's MLX framework, providing efficient speech analysis on Apple Silicon.

Python< F2E0 /span> 2,389 175 Updated Jun 10, 2025
C# 52 10 Updated Jun 6, 2025

Repository for reconstruction of average subtracted tubular regions code

Python 1 Updated Apr 1, 2025

Python bindings for llama.cpp

Python 9,231 1,145 Updated May 8, 2025

An extremely fast Python package and project manager, written in Rust.

Rust 57,790 1,648 Updated Jun 13, 2025

Official repository for LTX-Video

Python 6,667 547 Updated May 25, 2025

Fast protein structure searching or your money back

Python 103 4 Updated Apr 8, 2025

Visualize 3D template matching results from Warp

Python 5 Updated Mar 14, 2025

Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms

Python 27 2 Updated Jan 7, 2025

Deep learning tools for converting cryo-EM density maps to protein structures

Python 15 2 Updated Jan 29, 2025

The programs for preprocessing cryo-EM density maps for machine learning

Python 28 1 Updated Oct 1, 2024

A model-context-protocol server for molecules.

Python 75 10 Updated Apr 20, 2025

Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.

HTML 77 10 Updated Jun 12, 2025

[NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

Python 89 8 Updated Apr 28, 2024

CPlot2D: a simple plotting class in C++ for PostScript output

C++ 4 2 Updated Mar 26, 2014

一个 Transmission 浏览器管理界面。Transmission Web Control is a custom web UI. (该项目不再维护。)

CSS 4,776 773 Updated Jun 1, 2025
Python 27 9 Updated May 22, 2025

Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning

Python 30 5 Updated Apr 14, 2025

The Bluesky Social application for Web, iOS, and Android

TypeScript 16,261 2,275 Updated Jun 14, 2025

Source code for HOLE program.

Fortran 35 11 Updated Aug 15, 2024

Max OS X kernel driver for providing access to external drive SMART data

C++ 609 76 Updated Jun 25, 2021

From cryo-EM density map to atomic structure

Python 29 4 Updated Dec 10, 2024

Implements QuickLook in Zotero

JavaScript 774 82 Updated Jun 16, 2023
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