8000 added step to reorder bed columns based on order in PyRanges object before writing by fairliereese · Pull Request #275 · pyranges/pyranges · GitHub
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added step to reorder bed columns based on order in PyRanges object before writing #275

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Merged
merged 1 commit into from
Dec 8, 2022
Merged

added step to reorder bed columns based on order in PyRanges object before writing #275

merged 1 commit into from
Dec 8, 2022

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fairliereese
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@fairliereese fairliereese commented Jul 21, 2022 •
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_bed in out.py uses set operations to separate canonical (bed6) columns from all other columns. This creates inconsistent behaviour in the order that the 7th+ columns are saved in the output bed file. I added a line to retain the original ordering of the columns in the PyRanges object before saving.

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Fixes #274

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endrebak commented Jul 24, 2022 via email

@endrebak endrebak merged commit 53c261e into pyranges:master Dec 8, 2022
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endrebak commented Dec 8, 2022

Sorry for the late review; I have been busy.

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