8000 Boolean columns in original data frame in join · Issue #291 · pyranges/pyranges · GitHub
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Boolean columns in original data frame in join #291

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LudvigOlsen opened this issue Feb 17, 2023 · 3 comments
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Boolean columns in original data frame in join #291

LudvigOlsen opened this issue Feb 17, 2023 · 3 comments

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@LudvigOlsen
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Very cool package and nice with the givewell mention!

When the original data frame contains a bool column, join fails:

pr.PyRanges(
  pd.DataFrame({
      "Chromosome": "chr1",
      "Start": [0, 10, 20, 30],
      "End": [10, 20, 30, 40]
  })
).join(pr.PyRanges(
  pd.DataFrame({
      "Chromosome": "chr1",
      "Start": [5, 10, 20, 30],
      "End": [20, 20, 30, 40],
      "Site": [True, False, True, True],
  })
), how="right")

Exception: Unknown dtype bool in a column Site

Is there a reason for this or is it a bug?
@fairliereese
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Having this issue as well!

@fairliereese fairliereese mentioned this issue Mar 13, 2023
Merged
@endrebak
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endrebak commented Apr 30, 2023 via email

@endrebak
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endrebak commented May 1, 2023

Should be fixed in 0.0.123 which is out now. If something is not as expected, feel free to reopen.

Thanks for reporting.

@endrebak endrebak closed this as completed May 1, 2023
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@endrebak @fairliereese @LudvigOlsen
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