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bin Public
My bioinfo toolbox
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dorado Public
Forked from nanoporetech/doradoA LibTorch Basecaller for Oxford Nanopore Reads
C++ Other UpdatedOct 13, 2022 -
REDiscover Public
RNA editing discovery from NGS data.
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bonito Public
Forked from nanoporetech/bonitoConvolution Basecaller for Oxford Nanopore Reads
Python Other UpdatedMar 23, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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jetson_nanopore_sequencing Public
Forked from sirselim/jetson_nanopore_sequencingA place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
UpdatedSep 22, 2021 -
deeplexicon Public
Forked from Psy-Fer/deeplexiconSignal based nanopore RNA demultiplexing with convolutional neural networks
Jupyter Notebook MIT License UpdatedAug 31, 2021 -
ont_fast5_api Public
Forked from nanoporetech/ont_fast5_apiOxford Nanopore Technologies fast5 API software
Python Other UpdatedJul 21, 2021 -
megSAP Public
Forked from imgag/megSAPa Medical Genetics Sequence Analysis Pipeline
PHP GNU General Public License v3.0 UpdatedJun 8, 2021 -
pyguppyclient Public
Forked from nanoporetech/pyguppyclientPython client library for Guppy
Python Other UpdatedFeb 12, 2021 -
nanoRMS Public
Forked from novoalab/nanoRMSPrediction of RNA modification stoichiometry from per-read current intensity information using KNN and KMEANS algorithms
Jupyter Notebook MIT License UpdatedNov 27, 2020 -
eif Public
Forked from sahandha/eifExtended Isolation Forest for Anomaly Detection
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emacs-for-python Public
Forked from jhcepas/emacs-for-pythonCollection of emacs extensions specifically collected for python development, with workflow guidelines!
Python GNU General Public License v3.0 UpdatedOct 15, 2020 -
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taiyaki Public archive
Forked from nanoporetech/taiyakiTraining models for basecalling Oxford Nanopore reads
Python Other UpdatedDec 4, 2019 -
latex-moderncv Public
Forked from mliu7/latex-moderncvMy latex resume using the moderncv template
TeX UpdatedNov 28, 2019 -
singularity-userdocs Public
Forked from apptainer/singularity-userdocsUser Documentation
TeX UpdatedSep 27, 2019 -
OpenDBA Public
Forked from nodrogluap/OpenDBAGPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
C++ Other UpdatedAug 28, 2019 -
pytorch-tutorial Public
Forked from yunjey/pytorch-tutorialPyTorch Tutorial for Deep Learning Researchers
Python MIT License UpdatedJul 12, 2019 -
tombo Public
Forked from nanoporetech/tomboTombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Python Other UpdatedJun 2, 2019 -
badges Public
Repository to create badges for the attendees of conference/workshop
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pyScaf Public
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
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HiCembler Public
Assembler for HiC data
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Chiron Public
Forked from haotianteng/ChironA basecaller for Oxford Nanopore Technologies' sequencers
Python Other UpdatedNov 14, 2018 -
monty_hall Public
simple implementation demonstrating Monty Hall
Python GNU General Public License v3.0 UpdatedJul 18, 2018 -
rapsi Public
Rapid similarity search for proteins
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abstracts Public
Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms
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masurca Public
Forked from alekseyzimin/masurcaM4 GNU General Public License v3.0 UpdatedMar 14, 2018 -
FastaIndex Public
FastA indexing and sequence retrival.
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