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configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
Nextflow MIT License UpdatedMay 24, 2025 -
Pan-cancer_Lodietal Public
Forked from lambrechtslab/Pan-cancer_LodietalJupyter Notebook UpdatedApr 28, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedApr 23, 2025 -
scnanoseq Public
Forked from nf-core/scnanoseqSingle-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Nextflow MIT License UpdatedApr 15, 2025 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedApr 10, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedMar 11, 2025 -
radiantkit Public
Forked from BiCroLab/radiantkitAnalysis of YFISH image for GPSeq
Python MIT License UpdatedFeb 11, 2025 -
Wakhan Public
Forked from KolmogorovLab/WakhanHaplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
Python MIT License UpdatedFeb 10, 2025 -
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nextflow-radiantkit Public
Nextflow pipeline for the processing of GPSeq YFISH data
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flexiformatter Public
Moves flexiplex barcode and UMI to bam tags
Python MIT License UpdatedOct 24, 2024 -
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ASCAT.sc Public
Forked from VanLoo-lab/ASCAT.scASCAT.sc fork
HTML GNU General Public License v3.0 UpdatedJul 12, 2024 -
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gpseq_data Public
small test samples and reference files for gpseq nextflow pipeline
UpdatedJan 31, 2024 -
hic Public
Forked from nf-core/hicAnalysis of Chromosome Conformation Capture data (Hi-C)
Nextflow MIT License UpdatedJan 17, 2024 -
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fastx-barber_fixed Public
Forked from ggirelli/fastx-barberPython package to trim and extract flags from FASTA and FASTQ files.
Python MIT License UpdatedOct 23, 2023 -
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scCUTseq-manuscript Public
Forked from BiCroLab/scCUTseqCode and data used for scCUTseq manuscript
HTML MIT License UpdatedAug 17, 2023 -
mulled Public
Forked from BioContainers/mulledMulled - Automatized Containerized Software Repository
UpdatedFeb 22, 2023 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedNov 16, 2022 -
metastatic_lungcancer Public
Scripts and pipelines used for the analysis of 'Comparative genomic profiling identifies targetable brain metastasis drivers in non-small cell lung cancer'
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sbg2004-cutseq Public
Preprocessing and cna calling pipelines used for the sbg2004 manuscript
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ML_medbioinfo Public
Forked from bjornwallner/ML_medbioinfoMachine Learning in Medical Bioinformatics
Jupyter Notebook UpdatedMay 14, 2021