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group_genetic_distance Public
To derive within- and between-groups genetic distance based on pairwise genetic distance matrix
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MitoZ Public
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
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taxonomy_ranks Public
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
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gbseqextractor Public
Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.
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ParallelTask Public
Forked from moold/ParallelTaskA simple and lightweight parallel task engine
Python GNU General Public License v3.0 UpdatedJun 30, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMay 10, 2023 -
bold_identification Public
To identify taxa of given sequences via BOLD system (http://www.boldsystems.org/index.php)
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msaconverter Public
msaconverter is a tool to convert a multiple sequence alignment into different format with Biopython (http://www.biopython.org/)
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ntJoin Public
Forked from bcgsc/ntJoin🔗Genome assembly scaffolder using minimizer graphs
Python GNU General Public License v3.0 UpdatedJul 25, 2022 -
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Machine-learning-learning-notes Public
Forked from Vay-keen/Machine-learning-learning-notes周志华《机器学习》又称西瓜书是一本较为全面的书籍，书中详细介绍了机器学习领域不同类型的算法(例如：监督学习、无监督学习、半监督学习、强化学习、集成降维、特征选择等)，记录了本人在学习过程中的理解思路与扩展知识点，希望对新人阅读西瓜书有所帮助！
UpdatedFeb 26, 2022 -
easy-algorithm-interview-and-practice Public
Forked from bitcarmanlee/easy-algorithm-interview-and-practiceUpdatedOct 28, 2021 -
physalia-lcwgs Public
Forked from nt246/physalia-lcwgsFiles for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 11-14, 2021
HTML UpdatedOct 14, 2021 -
lcwgs-guide-tutorial Public
Forked from nt246/lcwgs-guide-tutorialR Creative Commons Zero v1.0 Universal UpdatedOct 14, 2021 -
specimen_bioseq_system Public
The Specimen Bioseq Information Managment System
Other UpdatedSep 23, 2021 -
atgcN_count Public
To stat the counts of each base in a fasta file.
GNU General Public License v3.0 UpdatedSep 23, 2021 -
To extract some sites (or codon) from a multiple sequence alignment
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breakSeqInNs_then_translate Public
Filter the sequences by translating the protein coding genes (PCGs) with proper genetic code table, if one of the PCGs has interal stop codon, filter out this sequence.
GNU General Public License v3.0 UpdatedSep 23, 2021 -
msa_cigars Public
A tool to get the CIGARs of a multiple sequence alignment.
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cigar_coordinates Public
To get the coordinates of a given CIGAR string.
GNU General Public License v3.0 UpdatedSep 23, 2021 -
polish_genbank Public
Check for the internal stop codon, then substitute the internal stop codon with NNN.
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find_longest_transcripts Public
To find out the longest transcripts/proteins
Python MIT License UpdatedSep 23, 2021 -
batch_tar Public
To tar (and compress) files or directories in batch mode.
Python GNU General Public License v3.0 UpdatedSep 23, 2021 -
extract_fasta_seq Public
To extract specific fasta sequences from a fasta file. By Guanliang MENG, see https://github.com/linzhi2013
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extract_codon_alignment Public
To extract some codon positions (1st, 2nd, 3rd) from a CDS alignment.
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mglcmdtools Public
`mglcmdtools` is a collection of common cmd tools intended to be used in Python3 scripts. By Guanliang MENG, see https://github.com/linzhi2013/mglcmdtools.
Python GNU General Public License v3.0 UpdatedSep 23, 2021 -
extract_specific_lines Public
To extract specific lines which maps the query ids (of the query file) from the subject file.
Python GNU General Public License v3.0 UpdatedSep 23, 2021
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