Stars
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Modin: Scale your Pandas workflows by changing a single line of code
R package for "sum of single effects" regression.
A python package for fitting a wide variety of Mixture Models
Implementation of the paper: 'Robust mixture modelling using the t distribution', D. Peel and G. J. McLachlan.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Tool package to perform in-silico CRISPR analysis and assessment
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
displays multiple genomic sequences in the form of a tube map
Variant Calling for the HPRC Release 2
Symmetric DUST for finding low-complexity regions in DNA sequences
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…
Structural variant and indel caller for mapped sequencing data
A structural variation pipeline for short-read sequencing