- Introduction to the jjm model (Link here)
- Running the model from start to finish
- Data input (ALK excel files)
- Data input into JJM
- Model setting, Model equations, Parameters (refer to technical annex)
- Running the 2021 assessment
- Updating input data
- Updating control file
- Single-stock vs two-stock models
- Understanding the Outputs
- Ascii files (difference between standard ADMB output and specialized ones for JJM)
- JJM outputs (standard)
- Pulling out important quantities from the jjm object (e.g. MSY table)
- Making plots from JJM (custom)
- Stock status under different regimes
- Generating new plots for diagnostic purposes
- Retrospective analysis
- Sensitivities in data – e.g. include/drop data
- Replacing CPUE indices
- Replacing age composition data
- Sensitivities in model settings
- Changing individual parameters
- Comparing model runs
- Current diagnostics available
- Making custom diagnostics
- Alternative uncertainty estimates
- Recommendations for improving the assessment