Stars
Scripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.
A tool for finding approximate repeats in DNA sequences using multiple spaced seeds
A lightweight tool for counting spaced seed k-mers in combination with Jellyfish.
Some C++ code for spaced seed sketching with kmers, parallelized with OpenCilk
Implementation of the rasbhari approach for spaced seed optimisation
bonsai-team / yass
Forked from laurentnoe/yassgenomic alignment similarity search tool
bonsai-team / Porechop_ABI
Forked from rrwick/PorechopAdapter trimmer for Oxford Nanopore reads using ab initio method
mreps: software for tandem repeat identification in DNA
Fast computation of highly sensitive spaced seeds for effective local similarity detection
A tool to rely chemical structures to biological structures
ekopylova / sortmerna
Forked from sortmerna/sortmernaThis is ongoing development of SortMeRNA. For the latest release, see http://bioinfo.lifl.fr/RNA/sortmerna/.
macieksk / seed-kraken
Forked from DerrickWood/krakenSpaced seed version of Kraken taxonomic sequence classification system
SortMeRNA: next-generation sequence filtering and alignment tool