Stars
Automatically generates plots showing the number of studies using transcriptomics technologies over time.
Identification of spatial homogeneous regions
Repository for meK-Means Inference Method
Compute the neighborhood consolidation matrix and identify SHRs
Repository for reproducing results for lr-kallisto
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
A Python package for barycentric rational and polynomial interpolation and approximation.
Code for reproducing the results in the second version of the preprint "Accurate quantification of single-nucleus and single-cell RNA-seq transcripts"
Identification and correction of systematic error in high-throughput sequence data
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Examples for gget (https://github.com/pachterlab/gget).
Flexible and efficient parsing, interpreting and editing of sequencing reads