Lists (17)
Stars
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
Depolymerase Predictor (DePP) - A machine learning tool facilitating phage depolymerase discovery
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
R package for paired and longitudinal ecological dissimilarities.
High accuracy RAG for answering questions from scientific documents with citations
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately as…
sensitive and precise assembly of short sequencing reads
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
GuaCAMOLE (Guanosine Cytosine Aware Metagenomic Opulence Least squares Estimation) algorithm for the efficient detection and removal of GC bias from metagenomic samples
Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
Pairwise ANI(Average Nucleotide Identity) visulization tool.
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Reconstruction of complete segmented RNA viral genomes from metatranscriptomes
Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especia…
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
alignment-free coverage calculation for metagenomic binning >100 times faster
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.