# install R 4.1.0
apt update -qq
apt install -y --no-install-recommends software-properties-common dirmngr
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/"
apt install -y --no-install-recommends r-base r-base-dev
# install netcdf4
tar -xzf dependency/hdf5-1.8.18.tar.gz
tar -xzf dependency/zlib-1.2.8.tar.gz
tar -xzf dependency/netcdf-4.4.1.1.tar.gz
# The flowing codes need sudoer priviledge
cd zlib-1.2.8 && ./configure --prefix=/usr/local && make install && cd ../ && rm -rf zlib-1.2.8
cd hdf5-1.8.18 && ./configure --with-zlib=/usr/local --prefix=/usr/local && make install && cd ../ && rm -rf hdf5-1.8.18
cd apt install -y m4 && netcdf-4.4.1.1 && CPPFLAGS=-I/usr/local/include LDFLAGS=-L/usr/local/lib ./configure --prefix=/usr/local && make install && cd ../ && rm -rf netcdf-4.4.1.1You need install both of r-base and Rtools
r-base 4.1.0
Rtools
install.packages("BiocManager", repos="http://mirrors.tuna.tsinghua.edu.cn/CRAN")
BiocManager::install(version = "3.13", update=FALSE)
BiocManager::install(c("mzR", "MSnbase", "igraph", "xcms"), update=FALSE)
BiocManager::install(c("devtools"), update=FALSE)
devtools::install_github("https://github.com/luanenhui/RFQI.git")
| version | date | author | Note |
|---|---|---|---|
| v2.0.0 | 2021-06-21 | luanenhui2009@gmail.com | switch from R 3.4.4 to R 4.1.0 |
| v1.1 | 2020-03-05 | luanenhui2009@gmail.com | Replace mclapply with parLapply for windows |