Stars
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
A variant caller for the GBA gene using WGS data
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Beautify the Git commit hash! This is a little useless toy inspired by BitCoin's "proof of work" concept. It enables you to modify your Git commit to enforce a certain prefix on the Git commit hash.
Code for computing various support scores for internodes
Codebase that benchmarks alignment-free sequence comparison methods
A small study in hardware accelerated AoS reversal
suffix array construction with SA-IS in x86 assembly
A quick dirty hack to make sure code on GitHub uses BLAST the right way
Sequence analysis library used by Eddy/Rivas lab code
Parallel Lightweight Suffix Array Algorithm.
Bash script to run gnuplot using LaTeX terminal, compile (PDF-)LaTeX, and extract figure.
a collection of scripts for organising bacterial genomes by species
A cross platform C99 library to get cpu features at runtime.
Packages I maintain on the Arch User Repository (AUR)
Automatically exported from code.google.com/p/exercisesheet
Collection of Suffix Array Construction Algorithms (SACAs)