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v2.0.0-alpha.3

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v2alpha3

v2alpha3

EAM: Reduce ne4 remap dt, Add MMF, Cleanup physgrid and SL, Fix ftype1 for NH theta-l, Prevent nans in theta-l init
Modify chem_pp pgi optimization, Implement superfast chemistry, Fix uninit elem MPI error, Add wsubmin param
for gustiness, Revised nudging code, Improve vectorization and threading in SL transport, Make PSC T threshold
namelist, allow pcols runtime option, Fix trop_strat/mam3/mam7 bugs, Add total column ozone output, Update dust
shortwave optics for RRTMGP, Fix moisture when init theta-l Tv, Add limiters on RRTMGP cloud optics, Antarctica
RRM support for F2010, Fix swband/lwband for history, Add co2 mass conservation test, Reinstate CLUBBv2 as default.

MMF: Fix COSP, Fix RRTMGP bug, Fix MMF radiation_tend, Summit runs, enable ESMT, add RCE compset

ELM: support SSP585, add v1.1. diags, Update FATES API to v10, Add fsurfdat for r05, 2010

MOSART: don't assume all fluxes are from land, replace latent heat formula for water vaporization

MPAS-ocean: FIx Redi mixing, Add ocean mesh structure for GPUs, Add analysis members, Fix cvmix driver area weighting,
Move daysSinceStartofSim calc, Remove RediKapp from gm, fix bad array sizes, fix tracer_adv bugs, Add mixed layer AM,
del2 ref. cell width, Add horizontal variable GM bolus

MPAS-seaice: qchange runoff interp for cryosphere compsets

config: add many v1.1 BGCEXP compsets, add ne0np4_northmaerica Initial Intel ifx support, use r0125 for ne120np4

all: Switch to SCORPIO, Update CIME to 5.8.23, full support for oARRM60to10 tri-grid

v1.3.0

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Verified

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rljacob Robert Jacob
v1.3.0

This version used only for additional G-cases in the v1 Cryosphere campaign.

MPAS-Ocean: Update MPAS-source to GM varying, add namelist options for 3D varying GM bolus Kappa

Flags are added to enable the 3D varying GM bolus Kappa, it is enabled by default and is on
whenever the GM parameterization is on. Output of kappaGM3D and the phase speed are added to
monthly history as well

Differences from v1.2 simulations include above and all of those listed in the v1.3.0-beta tag.

v1.3.0-beta

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Start of mark-petersen/ocean/gmBolus3Dvarying branch

v1.3 was used only for additional G-cases in the v1 cryosphere campaign.

v2 features (many off by default)

EAM; update GWD for QBO, new trigger for ZM, add CLUBBv2 (replaces v1), Add FV physics grid for
use with SE, HOMME theta-dycore development, add SL transport, remove l_ieflx_fix, gustiness feature

ELM: add water and inundation to MOSART, add soil erosion, Adds climate driven planting date for crops,
implement v2 data infrastructure.

MPAS-ocean: Add 3D GM Bolus and GM output

MPAS-Seaice: update snicar and snow grain, update snow model

CIME: Add UA and COARE ocean surface flux schemes

other:

EAM: fix bug in gases above model top in RRTMG, improve SCM replay mode, restart tests for theta dycore,
fix CO2 profile, redo mkatmsrffile tool, disable EUL SCM, make RRMTGP thread safe and a submodule,
fix tracer mixing ratios, restore aquaplanet, add load balance wrt column costs, update topo tool,
fix bug in create_chunks

ELM: fix 20TR compsets,Introduced a flux limiter to avoid the occurrence of negative litter fluxes,
update SBeTR, support LUH2 dataset, fix PETSc-based thermal model, fix hr_col update, update EMI,
fix CH4 inundation, update FATES api to 7.0, update land IC

MPAS-ocean: update BGC, bug fixes for KPP nonlocal source term, Turn eddyProductVariables AM on by default,
add ALE options, ocean advection CPU optimization, update threading and GPU, LIGHT update, add first
stage of ocean/ice-shelf coupling, turn on eddyProductVariables

MPAS-seaice: update threading and vectorization, other small updates to codebase, change mpascice to massi

MAPS-Landice: Add new ne30 grids with active MALI ( ne30_oECv3_aisgis and ne30_oECv3wLI_aisgis), Additions to ice shelf pressure and test case

CIME: update to cime 5.8.7-2, update MVK, PGN, TSC tests, Cmake build support, timing init

config updates: Add compy, update/fix Summit, update cori, compy impi workaround, anvil tasks, compy pe layouts

v1.2.1

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Verified

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rljacob Robert Jacob
v1.2.1 with 3D GM in ocean

This update to v1.2.0 does the following:  Add ne30_oARRM60to10 grid resolution.
Add options for 3D varying GM bolus and 2d varying phase speed, Add GM bolus
eddy stats, turn 3DGM on by default, add 3DGM namelist options, compute
landIceMask using geometric_features, bug fixes for nonlocal source term in KPP,
change all output to single precision and fix threading issue in GM.

Update machine files on cori, anvil, and LANL machines.

v1.2.0

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Verified

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rljacob Robert Jacob
v1.2.0 used for v1 Cryosphere Science Campaign

This release is on the maint-1.2 branch which was branched from master
on Feb 25, 2019 (7a3e32d), and is the code base for the Cryosphere Science Campaign
v1 simulations. This includes modified v1 versions of the atmosphere (EAM), land model (ELM),
ocean (MPAS-Ocean), sea ice (MPAS-Seaice), and land ice (MALI). A key feature of the E3SM v1
Cryosphere simulations is the inclusion of Antarctic ice shelf cavities in the ocean domain.
This allows the calculation of ice shelf basal melt rates, with a static ice shelf geometry.
Another distinction between standard E3SM configurations and Cryosphere configurations is
the inclusion of prescribed iceberg fluxes (using gridded monthly climatology data from
Merino et al 2016). To account for the explicit representation of Antarctic mass fluxes to
the ocean through prognostic basal melting and prescribed icebergs, standard representations
of runoff from Antarctica, both solid and liquid, are disabled.

Differences from v1.0 DECK simulations include all of those listed in the v1.1.0-beta tag.
Additional differences from the v1.1 BGC simulations are listed in the v1.2.0-beta tag.

archive/tangq/GMD_2020_O3v2

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This is an archive tag for the GMD paper on the O3v2 module (https://…

…doi.org/10.5194/gmd-2020-293).

This version of code is used for the O3v2 simulations in the paper. It enables the O3v2 module on the maint-1.0 branch with the PSC T threshold for ozone depletion as a namelist variable.

archive/WanH_JAMES_2020_simple_condensation

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Archive of convergence test code used by Wan et. al. (2020)

This is an archive of the huiwanpnnl/atm/simple_condensation branch of
the E3SM (DOI: 10.11578/E3SM/dc.20180418.36) GitHub repository.
The branch contains modifications to produce all the short-term (1-h -- 12-h)
convergence test simulations (with different configurations for simple condensation model)
for Wan et al. (2020), Improving time-step convergence in an atmosphere model with
simplified physics: the impacts of closure assumption and process coupling,
Journal of Advances in Modeling Earth Systems, https://doi.org/10.1029/2019MS001982.

SE dynamical core + simple condensation parameterization only for all of simulations.

archive/WanH_JAMES_2020_cam4_physics_revised_splitting

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Archive of code for climate simulations used by Wan et. al.(2020)

This is an archive of the "huiwanpnnl/atm/cam4_physics_revised_splitting" branch
of the E3SM (https://doi.org/10.11578/E3SM/dc.20180418.36) GitHub repository.
The branch contains modifications to produce all the long-term (10-year) E3SM
climate simulations using FV dynamical core and cam4 physics package
(with different configurations for the macro-physics (condensation) parameterization)
for Wan et al. (2020), Improving time-step convergence in an atmosphere model with
simplified physics: the impacts of closure assumption and process coupling,
Journal of Advances in Modeling Earth Systems, https://doi.org/10.1029/2019MS001982.

acme-split-2020-07-16

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Merge branch 'akturner/seaice/carbon_conservation' (PR E3SM-Project#3702

)

Seaice carbon conservation bug

This PR brings in a new mpas-source submodule with changes only to the
seaice core. It fixes a bug with carbon conservation in the sea ice BGC.

see MPAS-Dev PR E3SM-Project#610

Fixes E3SM-Project#3661

[non-BFB] only for configurations with seaice BGC

acme-split-2020-07-07

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Merge branch 'jgfouca/misc/cleanup_and_mappy' into master (PR E3SM-Pr…

…oject#3685)

Remove unused testlist XML files and prefer mappy to melvin in some places

[BFB]

* jgfouca/misc/cleanup_and_mappy:
  Remove unused testlist XML files and prefer mappy to melvin in some places
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