🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

Primalscheme3. Generation of highly multiplex primerschemes

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

Tools for working with primerbed files

A 'ggplot2' Extension for Consistent Axis Alignment

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

usegalaxy.* common tools

An Ansible role for installing and configuring CernVM-FS (CVMFS)

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

Official git repository for Biopython (originally converted from CVS)

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Snakemake workflow management system and CLI generation tool

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Implementation of Alphafold 3 from Google Deepmind in Pytorch

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data

Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

A curated list of awesome Machine Learning frameworks, libraries and software.

You can Learn Basic Machine learning Techniques from here

Tools to process and analyze deep sequencing data.

Customizable workflows based on snakemake and python for the analysis of NGS data

SplitsTree App

Reference-based consensus creation

Genome assembly evaluation tool

Fast and accurate de novo assembler for long reads

Repo for PrimerSchemes

Automatically exported from code.google.com/p/figtree