Stars
Tools to simulate longitudinal differential abundance for microbiome data
Simulation and power calculations for time-to-event trials
Implementation of the stego algorithm - Similarity Test for Estimating Genetic Outliers
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization
Efficient, transparent deep learning in hundreds of lines of code.
HCBravoLab / qsmooth
Forked from kokrah/qsmoothNormalization of high-throughput genomics data
COmplex Network Description Of Regulators, an R package for bipartite network analysis
MicrobiomeSC is a metagenomics analysis suite using a secure multi-party computation technique known as garbled circuits.
NMF: A Flexible R package for Nonnegative Matrix Factorization
EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.
R package for annotating metagenomic datasets with taxonomic information
Visualization of the Washington Post Airport Survey
Mostly useful scripts and files for processing MiSeq amplicon data
R package to manage and visualize metagenomic datasets with metaviz
Visualization of the microbiome of children from low-income countries
R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)
Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH
An interactive web application for demonstrating and using phyloseq.