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Tools to simulate longitudinal differential abundance for microbiome data

Jupyter Notebook 3 Updated Apr 28, 2020

PANDA Algorithm

R 2 2 Updated May 11, 2024

Group sequential design for clinical trials

R 51 13 Updated Jun 4, 2025

Simulation and power calculations for time-to-event trials

R 18 8 Updated May 21, 2020

10.25.18: ALPHA VERSION is up

Shell 1 Updated Dec 9, 2018

⚠️ 2018 ⚠️ Bioconductor Workshops

TeX 76 53 Updated May 15, 2019

Implementation of the stego algorithm - Similarity Test for Estimating Genetic Outliers

R 2 1 Updated Jul 21, 2016

Modeling Network State Transitions from Expression and Regulatory data (MONSTER)

R 3 1 Updated Sep 14, 2016

YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

R 13 2 Updated Mar 4, 2024

Efficient, transparent deep learning in hundreds of lines of code.

MATLAB 274 115 Updated Apr 25, 2019

Deep Zoom Image Downloader

Ruby 20 4 Updated Apr 22, 2025

Normalization of high-throughput genomics data

R 1 Updated Dec 7, 2015

COmplex Network Description Of Regulators, an R package for bipartite network analysis

R 12 6 Updated Jul 5, 2019

Normalization of high-throughput genomics data

R 2 3 Updated Dec 9, 2015

MicrobiomeSC is a metagenomics analysis suite using a secure multi-party computation technique known as garbled circuits.

Java 2 1 Updated Apr 6, 2016

NMF: A Flexible R package for Nonnegative Matrix Factorization

R 148 42 Updated Mar 14, 2023

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

JavaScript 70 12 Updated Mar 1, 2023

Devel branch of epivizr bioconductor package

R 9 5 Updated Jul 30, 2021

R package for annotating metagenomic datasets with taxonomic information

R 10 5 Updated Feb 11, 2020

Visualization of the Washington Post Airport Survey

HTML 3 Updated Apr 2, 2015

Mostly useful scripts and files for processing MiSeq amplicon data

Shell 16 7 Updated Jul 1, 2016

R package to manage and visualize metagenomic datasets with metaviz

R 7 Updated Jul 30, 2021
R 7 Updated Apr 17, 2015

Visualization of the microbiome of children from low-income countries

R 1 1 Updated Nov 30, 2014

R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)

R 208 35 Updated Jan 7, 2025
MATLAB 11 9 Updated Jul 30, 2022

Shape analysis of high-throughput data

R 19 1 Updated Feb 24, 2016

Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH

Shell 10 4 Updated Oct 31, 2016

An interactive web application for demonstrating and using phyloseq.

HTML 60 45 Updated Jul 18, 2019

My configuration files

Shell 5 1 Updated Nov 26, 2015
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