- Sunnyvale, CA
- jaredlumpe.com
Highlights
- Pro
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obsidian-spacekeys Public
Obsidian plugin to define hotkeys based on sequences of keypresses.
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ncbi-datasets Public
Forked from ncbi/datasetsNCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Jupyter Notebook Other UpdatedApr 3, 2025 -
obsidian-releases Public
Forked from obsidianmd/obsidian-releasesCommunity plugins list, theme list, and releases of Obsidian.
UpdatedFeb 13, 2025 -
eqtk Public
Forked from justinbois/eqtkEquilibrium Toolkit (EQTK)
Python MIT License UpdatedJan 28, 2025 -
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HexGrids.jl Public
Julia package for working with hexagonal grids.
Julia MIT License UpdatedDec 23, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedDec 5, 2024 -
gambit Public
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
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ox-json Public
JSON export back end for Emacs Org mode
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staphb-docker-builds Public
Forked from StaPH-B/docker-builds📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Dockerfile GNU General Public License v3.0 UpdatedApr 6, 2023 -
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gambit-publication Public
Snakemake workflow to generate figures and results from GAMBIT paper
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jlumpe-gambit-lab-nb Public archive
Jared Lumpe's digital lab notebook for MIDAS project
Jupyter Notebook UpdatedOct 6, 2022 -
biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (originally converted from CVS)
Python Other UpdatedOct 4, 2022 -
AbstractTrees.jl Public
Forked from JuliaCollections/AbstractTrees.jlAbstract julia interfaces for working with trees
Julia Other UpdatedSep 29, 2022 -
entrez-tools Public
Tools to make working with the Entrez EUtils more bearable.
Python UpdatedFeb 8, 2022 -
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rna-seq-star-deseq2 Public
Forked from snakemake-workflows/rna-seq-star-deseq2RNA-seq workflow using STAR and DESeq2
Python MIT License UpdatedNov 30, 2021 -
seaborn Public
Forked from mwaskom/seabornStatistical data visualization using matplotlib
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 26, 2021 -
miniwdl Public
Forked from chanzuckerberg/miniwdlWorkflow Description Language developer tools & local runner
Python MIT License UpdatedNov 7, 2021 -
progress-interface Public
Generic interface for monitoring task progress in Python.
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triarray Public
Python package for working with pairwise distance/similarity matrices in non-redundant format.
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paperpile-tools Public
Tools to remove some of the annoyances in Paperpile
Python UpdatedSep 5, 2021 -
pydatatypes Public archive
Python package for working with pseudo-statically-typed data.
Python MIT License UpdatedMay 28, 2021 -
ManifoldsBase.jl Public
Forked from JuliaManifolds/ManifoldsBase.jlBasic interface for manifolds in Julia
Julia MIT License UpdatedMay 8, 2021 -
Manifolds.jl Public
Forked from JuliaManifolds/Manifolds.jlManifolds.jl aims to provide both a unified interface to define and use manifolds as well as a library of manifolds to use for your projects.
Julia MIT License UpdatedMay 7, 2021