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SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED fil…
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Differential expression of RNA-seq data using the Negative Binomial
scRNAseq analysis notes from Ming Tang
An actionable database of publicly available single-cell RNA-seq data
Code for the paper "PixelCNN++: A PixelCNN Implementation with Discretized Logistic Mixture Likelihood and Other Modifications"
Tensorflow implementation of Gated Conditional Pixel Convolutional Neural Network
Adversarial AutoEncoder implemented with MXNet
Tensorflow implementation of variational auto-encoder for MNIST
Tensorflow implementation of Adversarial Autoencoders
Tensorflow Code for Adversarial AutoEncoder(AAE)
Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
A toolkit for visualisation and analysis of Spatial Transcriptomics datasets
A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
Single-cell analysis in Python. Scales to >100M cells.
A tool for unsupervised projection of single cell RNA-seq data
This is the official implementation for the paper 'Deep forest: Towards an alternative to deep neural networks'
GPU implementation of ARD NMF