GitHub - janfelix/bioinformatic_tools: Collection of scripts to perform basic bioinformatic and data processing steps

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Collection of scripts to perform basic bioinformatic and data processing steps

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Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
66.py		66.py
clean_fasta.py		clean_fasta.py
cluster_size_overview.py		cluster_size_overview.py
dascapital.py		dascapital.py
extract_hits.py		extract_hits.py
extract_label_size_csv.py		extract_label_size_csv.py
fasta2genbank.py		fasta2genbank.py
max2lineage_multi.py		max2lineage_multi.py
max2lineagex.py		max2lineagex.py
maxpar_csv.py		maxpar_csv.py
orf_finder.py		orf_finder.py
pool_fastas.py		pool_fastas.py
readme.txt		readme.txt
remove_stars.py		remove_stars.py
split_fastas.py		split_fastas.py
subsample_random.py		subsample_random.py
subset_fastas.py		subset_fastas.py
tab2csv.py		tab2csv.py
taxid2lineage.py		taxid2lineage.py
taxon_maxid_csv.py		taxon_maxid_csv.py

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#Author: Jan Felix Finke
#All code is available under the terms of the GNU AGPLv3 license, for details refer to: https://www.gnu.org/licenses/agpl-3.0.txt
#Scripts perform some common bioinformatic and data processing steps. Most work with a input-criteria-output format using sys.arg. Functions of the scripts are stated in the script title and a little more detailed in the header. I encourage proofreading the code, use at your onw risk...