Lists (4)
Stars
Fetch taxonomic information from Entrez using a list of TaxIDs and visualize user-selected taxonomic ranks with SankeyMATIC.
A Linux command-line tool to extract homologous proteins from proteomes using DIAMOND.
List of projects that provide terminal user interfaces
8EF9Accurate and rapid RiboRNA sequences Detector based on deep learning
Trinity RNA-Seq de novo transcriptome assembly
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
RAxML Next Generation: faster, easier-to-use and more flexible
Classify metagenomic contigs as eukaryotic or prokaryotic
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
IQ-TREE software version 2: phylogenetics by maximum likelihood
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.