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rust-phylogeny Public
Forked from RagnarGrootKoerkamp/rust-phylogenyRust package for constructing and analyzing phylogenies.
Rust MIT License UpdatedMay 1, 2025 -
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smrest Public
Tumour-only somatic mutation calling using long reads
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ncov-tools Public
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
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bri Public
Bam Read Index - Extract alignments from a bam file by readname
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assembly_accuracy Public
tools for assessing the accuracy of genome assemblies
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pipeline-umi-amplicon Public
Forked from nanoporetech/pipeline-umi-ampliconWorkflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
Python Other UpdatedFeb 27, 2024 -
longshot Public
Forked from pjedge/longshotdiploid SNV caller for error-prone reads
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nanopolish Public
Signal-level algorithms for MinION data
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rust-htslib Public
Forked from rust-bio/rust-htslibThis library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Rust MIT License UpdatedJul 21, 2023 -
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hts-sys Public
Forked from rust-bio/hts-sysRaw rust bindings for htslib
Rust MIT License UpdatedApr 14, 2023 -
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htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats
C Other UpdatedFeb 17, 2023 -
pbwt Public
Forked from richarddurbin/pbwtImplementation of Positional Burrows-Wheeler Transform for genetic data
C UpdatedDec 5, 2022 -
ncov2019-artic-nf Public
Forked from oicr-gsi/ncov2019-artic-nfA Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
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bamsurgeon Public
Forked from adamewing/bamsurgeontools for adding mutations to existing .bam files, used for testing mutation callers
Python MIT License UpdatedAug 24, 2022 -
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strline Public
Forked from sabiqali/strlineSTR Detection and Counting Pipelines
Python UpdatedOct 28, 2021 -
hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedSep 30, 2021 -
artic-tools Public
Forked from will-rowe/artic-toolsa set of tools for viral amplicon schemes
C++ MIT License UpdatedAug 12, 2021 -
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ncov-watch Public
Tools for detecting mutations of interest in SARS-CoV-2 sequencing results
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 29, 2021 -
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