A curated list of awesome ImageJ plugins for biologists. Your contributions are always welcome!
- OrientationJ - Directional Analyzer.
- CurveTrace - Extractor tracing curves on images.
- deepImageJ - Pre-trained deep learning models to detect various cells.
- QuickFigures - a toolset for creating scientific figures.
- deepImageJ - Pre-trained deep learning models to transform input images into super-resolved ones.
- Extended Depth of Field - Plugin to merge a stack of micrographs taken at different focal positions into a single focused image
- Z-stack Depth Colorcode - Plugin color-coding Z/T stacks.
- TrackMate - GUI-based particle tracker.
- TraJClassifier - Classifier of TrackMate trajectories.
- Linear Stack Alignment with SIFT - Plugin to align stacking-image with SIFT-algorithm.
- Polar Transformer - Plugin which converts images to polar coordinates.
