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A tool to find sequencing data and metadata from public databases.

Python 574 48 Updated Aug 13, 2024

Fast retrieval of metadata and fastq files with ffq and aria2

Python 7 Updated Apr 4, 2025

Named Entity Recogniton (NER) of biological terms in BioSample records using LLMs

Python 4 Updated Mar 31, 2025

Enhanced ChatGPT Clone: Features Agents, DeepSeek, Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message se…

TypeScript 25,535 4,403 Updated May 15, 2025

High-reproducibility CWL runner powered by Guix

Scheme 10 Updated May 6, 2025

Export iMessage data + run iMessage Diagnostics

Rust 3,791 178 Updated May 13, 2025

Convert OpenAI chat completion request to markdown and vice versa 🔄

Python 6 Updated Jan 6, 2025

A terminal assistant for the hopelessly confused

Python 1,307 73 Updated Dec 20, 2024

An open source platform for managing and analyzing biomedical big data

Go 404 121 Updated May 14, 2025

Command line tool for detecting life science data types.

Rust 5 2 Updated Oct 5, 2024

A high-throughput and memory-efficient inference and serving engine for LLMs

Python 47,345 7,416 Updated May 15, 2025

Yet another LLM command line interface

Shell 16 1 Updated Dec 9, 2024

file command's magic pattern file for bioinformatics

Makefile 20 1 Updated Nov 25, 2015

Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, Mistral Small 3.1 and other large language models.

Go 140,515 11,756 Updated May 15, 2025

A template for making Bluesky bots that post on their own schedule

TypeScript 104 12 Updated Nov 25, 2024

Meditron is a suite of open-source medical Large Language Models (LLMs).

Python 2,022 195 Updated Apr 10, 2024
Python 16 1 Updated Jan 15, 2025

Oxford Nanopore's Basecaller

C++ 653 82 Updated Apr 16, 2025

Bioinformatics I/O libraries in Rust

Rust 579 58 Updated May 12, 2025
TypeScript 32 1 Updated May 14, 2025

A little word cloud generator in Python

Python 10,385 2,332 Updated Apr 12, 2025

Convert Evernote .enex files to Markdown

Go 987 82 Updated Apr 17, 2025
Python 2 Updated Jun 30, 2023

A Gradio web UI for Large Language Models with support for multiple inference backends.

Python 43,583 5,619 Updated May 14, 2025

Safari web extension for DeepL translate.

CSS 150 5 Updated May 12, 2025

accurate LiftOver tool for new genome assemblies

Rust 126 13 Updated Aug 8, 2024

Snakemake workflow to perform Energy Landscape Analysis

R 1 1 Updated Apr 17, 2025

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Python 175,312 45,712 Updated May 14, 2025
Common Workflow Language 1 Updated May 16, 2024
4 Updated Nov 29, 2022
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