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holstegelab

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  1. MotifScope MotifScope Public

    A tool for motif annotation and visualization in tandem repeats.

    Python 11

  2. TREAT TREAT Public

    Tandem REpeat Annotation Toolkit (TREAT)

    Python 8

  3. otter otter Public

    Generic targeted local assembler and genotyper for long-read data

    C++ 7

  4. short_read_analyzing_pipeline_Snakemake short_read_analyzing_pipeline_Snakemake Public

    Python 3 1

  5. shortread_seq_analysis shortread_seq_analysis Public

    Sequencing QC scripts for handling Illumina data (used in ADES WES/WGS analysis)

    Python 2

  6. zslurm zslurm Public

    Slurm wrapper with worker nodes

    Python 1 1

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