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SpeedrunningPLMs Public
Forked from Synthyra/SpeedrunningPLMsESM2 (150M) in 1 hour
Python MIT License UpdatedJul 2, 2025 -
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ESM2-Training Public
Code for processing FASTA files into batched, tokenized, and padded sequences, and training FlashAttention-based implementations of ESM-2
Python MIT License UpdatedMay 20, 2025 -
proteinfertorch Public
Forked from samirchar/proteinfertorchUnofficial PyTorch version of ProteInfer, originally implemented in TensorFlow 1.X and converted for PyTorch compatibility.
Jupyter Notebook Apache License 2.0 UpdatedMay 19, 2025 -
lobster Public
Forked from prescient-design/lobsterLbster: Language models for Biological Sequence Transformation and Evolutionary Representation
Python Apache License 2.0 UpdatedMay 19, 2025 -
progen3 Public
Forked from Profluent-AI/progen3Public Release of ProGen3 family of Models
Python Apache License 2.0 UpdatedApr 16, 2025 -
ColabFold Public
Forked from sokrypton/ColabFoldMaking Protein folding accessible to all via Google Colab!
Jupyter Notebook MIT License UpdatedMar 10, 2023 -
ThermiaGenesisSmartControl Public
Forked from gustavstrandberg/ThermiaGenesisSmartControlSmart control of Genesis heat pump based on electricity price
MIT License UpdatedSep 22, 2022 -
openfold Public
Forked from aqlaboratory/openfoldTrainable PyTorch reproduction of AlphaFold 2
Python Apache License 2.0 UpdatedSep 14, 2022 -
alphafold Public
Forked from google-deepmind/alphafoldOpen source code for AlphaFold.
Python Apache License 2.0 UpdatedSep 14, 2022 -
Uni-Mol Public
Forked from deepmodeling/Uni-MolA Universal 3D Molecular Representation Learning Framework
Python MIT License UpdatedSep 14, 2022 -
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alphafill Public
Forked from PDB-REDO/alphafillAlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…
C++ Other UpdatedFeb 17, 2022 -
alphafold2 Public
Forked from lucidrains/alphafold2To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Python MIT License UpdatedDec 11, 2021 -
gputil Public
Forked from anderskm/gputilA Python module for getting the GPU status from NVIDA GPUs using nvidia-smi programmically in Python
Python MIT License UpdatedOct 1, 2020 -
neurips19-graph-protein-design Public
Forked from jingraham/neurips19-graph-protein-designGenerative Models for Graph-Based Protein Design
Python MIT License UpdatedDec 12, 2019 -
tape-neurips2019 Public
Forked from songlab-cal/tape-neurips2019Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Python MIT License UpdatedDec 9, 2019 -
bio_embeddings Public
Forked from sacdallago/bio_embeddings[WIP] python package to embed protein sequences using different models (contextualized and not)
Jupyter Notebook MIT License UpdatedDec 8, 2019 -
masif Public
Forked from LPDI-EPFL/masifMaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
Python Apache License 2.0 UpdatedOct 27, 2019 -
protein-sequence-embedding-iclr2019 Public
Forked from tbepler/protein-sequence-embedding-iclr2019Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Python Other UpdatedOct 19, 2019 -
UDSMProt Public
Forked from nstrodt/UDSMProtProtein sequence classification with self-supervised pretraining
Python Other UpdatedSep 2, 2019 -
DeepSequence-PyTorch Public
Forked from ArnaudFickinger/DeepSequence-PyTorchPython UpdatedAug 13, 2019 -
MEME Public
Forked from cinquin/MEMEMEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
C Other UpdatedJul 26, 2017
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