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Source code for molecular graphics program UCSF ChimeraX

Python 195 36 Updated Jul 24, 2025

Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.

57,899 6,248 Updated Jun 4, 2025

Library of deep learning models and datasets designed to make deep learning more accessible and accelerate ML research.

Python 16,329 3,630 Updated Jun 2, 2023

Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network (NIPS 2017)

Python 152 47 Updated Nov 1, 2018

TensorFlow Neural Machine Translation Tutorial

Python 6,436 1,955 Updated Oct 9, 2022

a package to simulate fluid surfaces and biomembranes

C++ 32 10 Updated Jul 17, 2025

TS2CG version 2

C++ 15 3 Updated Jul 15, 2025

TS2CG version 1.1

C++ 7 4 Updated Feb 1, 2024

Workshop materials for 2025 POSE workshop

Jupyter Notebook 2 Updated Apr 15, 2025
Jupyter Notebook 5 Updated Feb 25, 2025
Python 10 2 Updated Jan 13, 2025
Python 127 10 Updated Jan 13, 2025

DeepMSProfiler, an innovative data analysis tool focused on liquid chromatography mass spectrometry (LC-MS) data.

Python 27 4 Updated Sep 17, 2024

Benchmarking human and machine learning performance.

Jupyter Notebook 34 8 Updated Jun 9, 2020

An extremely fast Python package and project manager, written in Rust.

Rust 62,393 1,796 Updated Jul 24, 2025
Python 117 39 Updated Apr 8, 2023

The code for the article "Fully Automated Unconstrained Analysis of High-Resolution Mass Spectrometry Data with Machine Learning"

Jupyter Notebook 27 4 Updated Jan 20, 2025

Automated analysis of LCMS data for high throughput chemistry experiments

HTML 20 Updated May 26, 2025

peak utils fork (that has stuff fixed)

Python 9 10 Updated Sep 9, 2015
Jupyter Notebook 26 8 Updated Feb 9, 2024

Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common t…

Python 132 38 Updated Jul 23, 2025

Describe and apply transformation on molecular structures and topologies

Python 116 50 Updated Jul 17, 2025

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Python 163 26 Updated Jul 23, 2025
Python 7 1 Updated Dec 1, 2023

Supplementary data files for "A Computational Model Replicating the Lipid Composition of a Human Epithelial Plasma Membrane "

1 1 Updated Mar 24, 2022
Python 19 9 Updated Feb 6, 2017

Chemist AI Agent for Developing Materials Datasets with Natural Language Prompts

Python 52 6 Updated Nov 13, 2024

High accuracy RAG for answering questions from scientific documents with citations

Python 7,571 754 Updated Jul 24, 2025
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