This repository includes the code upon submission used to reproduce the results and plots of the manuscript "Using protein-per-mRNA differences among human tissues in codon optimization". Apart from the data in "data" directory, the following datasets are required:
- Human codon and codon pair usage from CoCoPUT: https://hive.biochemistry.gwu.edu/review/codon2
- Human coding sequences from CCDS: ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_human/CCDS_nucleotide.current.fna.gz
For questions and help, please contact: xavier.hernandez@crg.eu
This code is under a common MIT LICENSE. Please, check LICENSE for further information.