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K2 Public
Prospector Heads: Generalized Feature Attribution for Large Models & Data
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prospectors-v2 Public
Support for new inductive biases, GPU acceleration, kernels for LLM steering.
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codex-analysis Public
Shared repo for thesis work involving: Deep Learning, Computer Vision, Multi-task Learning, weak supervision, eXplainable AI, Salient Object Detection, Computational Pathology, megapixel & multiple…
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MulticompartmentTumors Public
Code for "Multicompartment modeling of protein shedding kinetics during vascularized tumor growth"
Jupyter Notebook UpdatedMay 3, 2021 -
cs229_dl_multiomics Public
deep learning techniques for multi-omics integration (CS 229 project)
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markerville-old-heroku Public
Older version of markerville - repo for Heroku hosting
HTML UpdatedJul 26, 2017 -
TumorKinetics Public
A GPU/CUDA-driven tumor proliferation simulation built at Mallick Lab with partnership from University of Louisville.
C++ UpdatedOct 26, 2016 -
MarkerArk Public
An NLP-driven biomarker aggregation pipeline built at Mallick Lab with partnership from Stanford's Info Lab.
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QuaffAnalysis Public
Analysis of quaff aligner on minion sequence data. Project at Holmes Lab, Dept. of BioE, UC Berkeley.
Makefile UpdatedSep 27, 2016 -
lbnl Public
Interpolation data analysis @ Lawrence Berkeley National Labs — under Dr. Greg Hura.
C++ UpdatedNov 10, 2015 -
bioe131 Public
Computational Biology coursework @ Berkeley — BioE 131, taught by Dr. Ian Holmes, Spring 2015.
Python UpdatedNov 10, 2015
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