Stars
The implementation of "Accurate and fast non-sequential protein structural alignment solver with entropy-regularized partial linear sum assignment problem formulation" (epLSAP-align)
Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
DualNetGO: A Dual Network Model for Protein Function Prediction via Effective Feature Selection
[An Introduction to Materials Informatics, Prof. Zhang Tong-yi] Th 8000 e transfer learning code for understanding and teaching : Boosting for transfer learning with single / multiple source(s)
Benchmarking protein structure alignment algorithms on several databases
Source code of 'PolarRec: Improving Radio Interferometric Data Reconstruction Using Polar Coordinates', CVPR'24 accepted. By Ruoqi Wang, Zhuoyang Chen, Jiayi Zhu, Qiong Luo, Feng Wang
Detection of remote homology by comparison of protein language model representations
Foldseek enables fast and sensitive comparisons of large structure sets.
snakemake pipeline for creating trees from sequence sets
repo for the Novozymes enzyme stability prediction Kaggle competition
The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
DistilProtBert implementation, a distilled version of ProtBert model.
Haplotype-aware CNV analysis from single-cell RNA-seq