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diHMM-cpp Public
Forked from ykai16/diHMMImproved implementation of diHMM in C++
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Giotto Public
Forked from drieslab/GiottoSingle-cell spatial analysis toolbox
R GNU General Public License v3.0 UpdatedApr 15, 2024 -
ONTraC Public
Forked from gyuanlab/ONTraCOrdered Niche Trajectory Construction
Python MIT License UpdatedApr 15, 2024 -
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Giotto_ReadtheDocs Public
Forked from drieslab/Giotto_ReadtheDocsR MIT License UpdatedNov 29, 2022 rescue Public
Forked from seasamgo/rescueBootstrap imputation for scRNAseq data
R UpdatedJul 30, 2022 HubPredictor Public
Forked from huangjialiangcn/HubPredictorHubPredictor is the R function to run Bayesian Additive Regression Trees (BART) model for predicting chromatin interaction hubs using histone marks information.
R UpdatedJul 30, 2022 haystack_bio Public
Forked from pinellolab/haystack_bioHaystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
HTML Other UpdatedJul 30, 2022 GiniClust Public
Forked from lanjiangboston/GiniClustGiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
GiniClust3 Public
Forked from rdong08/GiniClust3Rare cell identification tool for single cell datasets
Jupyter Notebook Other UpdatedJul 30, 2022 CRISPResso Public
Forked from lucapinello/CRISPRessoSoftware pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Python Other UpdatedJul 30, 2022 PySCUBA Public
Forked from GGiecold-zz/PySCUBAPython for Single-cell Clustering Using Bifurcation Analysis
ECLAIR Public
Forked from GGiecold-zz/ECLAIRRobust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.
DWLS Public
Forked from dtsoucas/DWLSGene expression deconvolution using dampened weighted least squares
R UpdatedJul 30, 2022 STREAM Public
Forked from pinellolab/STREAMSTREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Jupyter Notebook GNU Affero General Public License v3.0 UpdatedDec 18, 2021
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