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jimrperkins / linkcomm
Forked from alextkalinka/linkcommTools for Generating, Visualising, and Analysing Link Communities in Networks
My repository for learning Python
Code and summary results for "Best practices for normalization of Nanostring nCounter gene expression cohorts"
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
This repo contains useful functions for doing typical bioinformatics tasks that I have developed during my PhD, and generalised here to make them useful to others.
R package containing useful functions for mutational signature analysis
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
A simplified pipeline for ctDNA sequencing data analysis
Analysis of cfDNA data with UMIs (consensus generation, SNV calling, annotation and evaluation of fragment length profiles)
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
C library for high-throughput sequencing data formats
SciLifeLab / NGI-RNAseq
Forked from nf-core/rnaseqNextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Scripts and Pipeline for the next generation sequencing data managment/analysis