Stars
Interactive visualization and sharing of cell tracking data in the browser
List of openly available dataset generated by our lab
Cell Tracking metrics and tools for the CellTrackingChallenge as described in 'CHOTA: A Higher Order Accuracy Metric for Cell Tracking'
pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to charac…
Loading and handling microscopy data in blender
A platform for compiling, analyzing, and exploring tracking data
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
AutoCoEv – a high-throughput in silico pipeline for predicting novel protein-protein interactions
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
TrackMate is your buddy for your everyday tracking.
some useful function to get Label from ROIs and vice versa , and more!
DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
Point Spread Function calculations for fluorescence microscopy.