Tags: emmarogge/sourmash
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3.2.2 Improvements: - more refactoring of MinHash API (sourmash-bio#889) - add_hash_with_abundance method in core library (sourmash-bio#892) - Replace mins_push and abunds_push with set_abundances (sourmash-bio#887) - More refactoring of MinHash comparison code (sourmash-bio#882) - better sourmash compare error handling (sourmash-bio#876) Bugs: - add_hash with num doesn't set abundances properly (sourmash-bio#891) - name signatures based on md5sum, not on name() (sourmash-bio#884) Build, CI and docs: - update docs for how to run Rust tests (sourmash-bio#888)
3.2.1 Bugs: - re-add 'signature' as alias for 'sig' (sourmash-bio#881)
3.2.0 Features: - Move functionality to Rust for signature computation and downsampling code in sbtmh.py (sourmash-bio#845) (sourmash-bio#856) - add --labeltext to plot (sourmash-bio#854) Improvements: - Improve sketching performance with lookup tables for complement and DNA validation (sourmash-bio#861) (sourmash-bio#865) - refactor argparse.FileType out of sourmash argument handling. (sourmash-bio#853) Bugs: - Fix 'gather' threshold reporting to report threshold, not match. (sourmash-bio#850) - Fix counting of species during lca index (sourmash-bio#841) Build, CI and docs: - Fix travis conditions and pip usage (sourmash-bio#873) - Use Python dev mode on 3.7, and build PRs that merge against any branch (sourmash-bio#864) - Use tarpaulin instead of grcov (sourmash-bio#862) - only run rust checks if it changes rust code (sourmash-bio#852) - Release process update for 3.1.0 (sourmash-bio#847) - Ignore .sig and .sbt files for repo language stats (sourmash-bio#846)
3.1.0 Features: - Implement improved & consistent argument parsing (sourmash-bio#785) - Moving loading and save sigs to rust (sourmash-bio#532) - Update gather implementations for LCA and SBT to use thresholding (sourmash-bio#843) Improvements: - Do add_many in Rust, use it in LCA _signatures (sourmash-bio#826) (sourmash-bio#840) - Expose an unload method for SBT nodes (sourmash-bio#784) Build, CI and docs: - Trigger new Software Heritage archival snapshot on new tags (sourmash-bio#839) - Fix netlify build (sourmash-bio#842) - Document code structure in dev guide (sourmash-bio#832) - use python 3.7 in RTD build (sourmash-bio#825)
3.0.1 Improvements: - Add a 'display_lineage' function to lca_utils.py (sourmash-bio#813) Build, CI and docs: - Fix read the docs build (sourmash-bio#820)
3.0.0 Features: - Replacing C++ with Rust (sourmash-bio#424) - Create an Index abstract base class (sourmash-bio#556) Improvements: - improve error handling etc. in `sourmash lca index`. (sourmash-bio#798) - Move similarity with abundance computation into Rust (sourmash-bio#808) Bugs: - fix mem leak in get_mins (sourmash-bio#807) - Fix LCA search error if query has abundance (sourmash-bio#804) Build, CI and docs: - Set up MSRV, minimum supported rust version (sourmash-bio#806) - update docs and add recommonmark as a test dependency (sourmash-bio#805) - Release process updates and sourmash 3.0 release notes (sourmash-bio#776)
2.3.1 Bugs: - fix some bugs in rankinfo (sourmash-bio#797) - Better molecule type checks (sourmash-bio#782)
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