Stars
Pipeline to fetch metadata and raw FastQ files from public databases
Amplicon sequencing analysis workflow using DADA2 and QIIME2
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
music and audio library for Gibber
More scalable dereplication for metagenome assembled genomes
Fast and accurate genomic distances using HyperLogLog
Send push notifications to your phone or desktop using PUT/POST
Apprise - Push Notifications that work with just about every platform!
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Download files from NCBI Entrez by accession
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
Notes and code for Bayesian ecosystem modeling IAP course
ratatstats / manusdown
Forked from ismayc/thesisdownAn updated R Markdown thesis template using the bookdown package
This is the development home of the workflow management system Snakemake. For general information, see
Experimental charting library for Svelte
Talkyard production installation on one single server.
A community discussion platform: Brings together the main features from StackOverflow, Slack, Discourse, Reddit, and Disqus blog comments.
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
Microbial Populations as Clusters Of Gene Transfer
Turn (almost) any Python command line program into a full GUI application with one line
A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al
1danjordan / hugo-envisioned
Forked from shawnohare/hugo-tufteContent centric Hugo blogging theme styled with Tufte-css
An analysis and visualization platform for 'omics data