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A new high-resolution long-read metagenome assembler for even noisy reads
syncmer graphs, and perhaps other sorts of sequence graphs
Multiple sequence alignment of long tandem repeats
A command line utilty for working with BINSEQ files
Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.
Genome modeling and design across all domains of life
Fast and exact gap-affine partial order alignment
i3 + Plasma: using the i3 window manager on the top of KDE Plasma and other dotfiles, configurations, scripts, workarounds and practises from my Debian Sid machines.
Construction and representation of human pangenome graphs
VACmap: a long-read aligner specifically designed for complex structural variation discovery
Aligns short reads using dynamic seed size with strobemers
A repository for generating strobemers and evalaution
De novo tandem repeat calling from PacBio HiFi data
Detecting multi-genome synteny using minimizer graph mapping
A reimplementation of the WaveFront Alignment algorithm at low memory
A browser-based guitar tab editor, similar to TuxGuitar or PowerTab. Work-in-progress.
Read-based phasing of genomic variants, also called haplotype assembly
C library for high-throughput sequencing data formats
Follow up to Grace Blackwell's 661k dataset, for 2023
Rust library for processing sequencing reads.