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Starred repositories
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can…
VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and …
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
Grow your own Christmas tree within R using tree architectural models
CFIA-NCFAD / nf-flu
Forked from peterk87/nf-fluInfluenza genome analysis Nextflow workflow
Enhancing {ggplot2} plots with statistical analysis 📊📣
Evaluación del impacto del proceso de rarefacción en la detección de comunidades microbianas en datos de amplicones ARNr 16S
A bioinformatic pipeline for ultra-fast analysis of cfDNA using Oxford Nanopore Technologies sequencing.
GavinHaLab / ichorCNA
Forked from broadinstitute/ichorCNAEstimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
Automatic Generation of Visualizations and Infographics using Large Language Models
Rapid and accurate ancestry inference using SNVs.
web-based analysis tool for rare disease genomics
A bioinformatics pipeline to phase and impute genetic data
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
Map genetic variants and protein positions to protein interfaces in 3D
A pipeline for running AMRfinderPlus and collating results into functional classes
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Surveillance of pathogens using population genomics and sequencing
Precision HLA typing from next-generation sequencing data
Precision HLA typing from next-generation sequencing data
Variant Analysis and Curation Tool (Back-end, REST API and Internal Client)