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StainedGlass Public
Forked from mrvollger/StainedGlassMake colorful identity heatmaps of genomic sequence
HTML MIT License UpdatedMar 22, 2024 -
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LTR_retriever Public
Forked from oushujun/LTR_retrieverLTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Perl GNU General Public License v3.0 UpdatedDec 29, 2021 -
Finder Public
Forked from sagnikbanerjee15/FinderA fully automated gene annotator from RNA-Seq expression data
Perl MIT License UpdatedAug 14, 2021 -
Flye Public
Forked from mikolmogorov/FlyeDe novo assembler for single molecule sequencing reads using repeat graphs
C Other UpdatedJul 9, 2021 -
juicer Public
Forked from aidenlab/juicerA One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Shell MIT License UpdatedMar 26, 2021 -
Ratatosk Public
Forked from DecodeGenetics/RatatoskHybrid error correction of long reads using colored de Bruijn graphs
C++ UpdatedJul 22, 2020 -
OrthoFinder Public
Forked from davidemms/OrthoFinderPhylogenetic orthology inference for comparative genomics
Python GNU General Public License v3.0 UpdatedJul 8, 2020 -
BRAKER Public
Forked from Gaius-Augustus/BRAKERBRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Perl Other UpdatedDec 16, 2019 -
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Comparative-Annotation-Toolkit Public
Forked from ComparativeGenomicsToolkit/Comparative-Annotation-ToolkitPython Apache License 2.0 UpdatedNov 13, 2019 -
nanopolish Public
Forked from jts/nanopolishSignal-level algorithms for MinION data
C++ MIT License UpdatedDec 12, 2017 -
NA12878 Public
Forked from nanopore-wgs-consortium/NA12878Data and analysis for NA12878 genome on nanopore
Other UpdatedOct 12, 2017 -
ngmlr Public
Forked from philres/ngmlrNgmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome with a focus on reads that span structural variations
C++ MIT License UpdatedMay 5, 2017 -
nanoraw Public
Forked from marcus1487/nanorawGenome guided re-segmention and visualization for raw nanopore sequencing data.
Python Other UpdatedMay 5, 2017 -
nanonet Public
Forked from ProgramFiles/nanonetFirst generation RNN basecaller
C++ Mozilla Public License 2.0 UpdatedApr 29, 2017 -
canu Public
Forked from marbl/canuA single molecule sequence assembler for genomes large and small.
C++ UpdatedJan 30, 2017 -
IterativeErrorCorrection Public
Forked from hillerlab/IterativeErrorCorrectionIterative error correction of long reads
Python MIT License UpdatedJan 11, 2017 -
homebrew-science Public
Forked from ahmadia/homebrew-science🔬 Scientific formulae for the Homebrew package manager
Ruby Other UpdatedOct 20, 2016 -
Tailor Public
Forked from jhhung/TailorTailor is a fast short read aligner like bowtie/BWA/SOAP2 but is designed specifically to discovering trimming and tailing events for small silencing RNAs.
C++ Other UpdatedApr 13, 2016 -
piler-64 Public
Support for large memory allocations for the genomic repeat analysis tool from Robert Edgar and Eugene Myers.
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kallisto Public
Forked from pachterlab/kallistoNear optimal RNA-Seq quantification
C++ Other UpdatedMay 12, 2015 -
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sandtrout Public
Accessory scripts for the MAKER annotation pipeline
MIT License UpdatedMar 3, 2015 -
PASApipeline Public
Forked from PASApipeline/PASApipelinePASA software
Perl Other UpdatedFeb 23, 2015 -
picard Public
Forked from broadinstitute/picardA set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
Java UpdatedNov 14, 2014 -
RepARK Public
Forked from PhKoch/RepARKRepetitive motif detection by Assembly of Repetitive K-mers
Perl UpdatedJul 21, 2014 -
Fastool Public
Forked from fstrozzi/FastoolSimple and quick FastQ and FastA tool for file reading and conversion
C UpdatedJul 11, 2014 -
pilon Public
Forked from broadinstitute/pilonScala GNU General Public License v2.0 UpdatedFeb 10, 2014
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