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q2cli Public
Forked from qiime2/q2cliCommand line interface for QIIME 2
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 30, 2025 -
q2-moshpit Public
Forked from misialq/q2-annotateMOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 28, 2025 -
q2-composition Public
Forked from qiime2/q2-compositionQIIME2 plugin for compositional data analysis
Python UpdatedApr 23, 2025 -
q2-feature-classifier Public
Forked from qiime2/q2-feature-classifierQIIME 2 plugin supporting taxonomic classification
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 24, 2025 -
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myst-theme Public
Forked from jupyter-book/myst-themePackages for creating MyST websites themes using React and Remix
TypeScript MIT License UpdatedFeb 21, 2025 -
intersphinx Public
Forked from continuous-foundation/intersphinxRead and write intersphinx `objects.inv` from node or the command line.
TypeScript MIT License UpdatedJan 11, 2025 -
moshpit-docs Public
Forked from bokulich-lab/moshpit-docsMOSHPIT plugin suite documentation
TeX BSD 3-Clause "New" or "Revised" License UpdatedDec 18, 2024 -
4cscc-lab-manual-microbit-makecode Public
Forked from 4cscc/4cscc-lab-manual-microbit-makecodeHTML MIT License UpdatedDec 18, 2024 -
q2-fmt Public
Forked from qiime2/q2-fmtWIP
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 8, 2024 -
galaxy-tools Public
Forked from qiime2/galaxy-toolsWIP: not ready for use yet
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 29, 2024 -
q2-stats Public
Forked from qiime2/q2-statsPython BSD 3-Clause "New" or "Revised" License UpdatedOct 22, 2024 -
q2-types Public
Forked from qiime2/q2-typesDefinitions of common QIIME 2 types.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 22, 2024 -
qiime2 Public
Forked from qiime2/qiime2The name says it all...
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 2, 2024 -
developing-with-qiime2 Public
Forked from caporaso-lab/developing-with-qiime2Developing with QIIME 2
TeX UpdatedJul 2, 2024 -
scikit-bio-feedstock Public
Forked from conda-forge/scikit-bio-feedstockA conda-smithy repository for scikit-bio.
BSD 3-Clause "New" or "Revised" License UpdatedMar 22, 2024 -
view.qiime.org Public
Forked from qiime2/q2view-oldJavaScript BSD 3-Clause "New" or "Revised" License UpdatedOct 17, 2023 -
RESCRIPt Public
Forked from bokulich-lab/RESCRIPtREference Sequence annotation and CuRatIon Pipeline
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 4, 2023 -
q2-assembly Public
Forked from bokulich-lab/q2-assemblyQIIME 2 plugin for (meta)genome assembly.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 4, 2023 -
q2-sapienns Public
Forked from caporaso-lab/q2-sapiennsPython BSD 3-Clause "New" or "Revised" License UpdatedSep 28, 2023 -
q2-types-genomics Public
Forked from misialq/q2-types-genomicsQIIME 2 types for genomics plugins.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 27, 2023 -
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q2dataflow Public
Forked from qiime2/q2dataflowPython BSD 3-Clause "New" or "Revised" License UpdatedApr 28, 2023 -
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static-site-infrastructure Public
Forked from qiime2/static-site-infrastructureDockerfile BSD 3-Clause "New" or "Revised" License UpdatedFeb 27, 2023 -
q2lint Public
Forked from qiime2/q2lintLinter for official QIIME 2 software.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 11, 2023 -
q2-gneiss Public
Forked from qiime2/q2-gneissQIIME2 plugin for Gneiss
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 15, 2022 -
gneiss Public
Forked from biocore/gneisscompositional statistics and visualization toolbox
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 15, 2022 -
scikit-bio Public
Forked from scikit-bio/scikit-bioCore objects, functions and statistics for working with biological data in Python.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 9, 2022 -
package-integration Public
Forked from qiime2/package-integrationJinja BSD 3-Clause "New" or "Revised" License UpdatedNov 21, 2022
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