Refuse #163
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| name: Anaconda | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| #- name: Add conda to system path | |
| # run: | | |
| # # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| # echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install mamba | |
| run: | | |
| wget -nv -O Miniforge.sh https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-$(uname)-$(uname -m).sh | |
| bash Miniforge.sh -b -p ./mambaforge | |
| ./mambaforge/bin/mamba init | |
| source ./mambaforge/etc/profile.d/conda.sh | |
| - name: Create generic environment | |
| run: | | |
| source ./mambaforge/etc/profile.d/conda.sh && mamba env create -f environment.yml | |
| - name: Create R environment | |
| run: | | |
| source ./mambaforge/etc/profile.d/conda.sh && mamba env create -f assets/r-environment.yml | |
| - name: Create conda environment | |
| run: | | |
| source ./mambaforge/etc/profile.d/conda.sh && mamba remove -y -n nf-LO --all | |
| source ./mambaforge/etc/profile.d/conda.sh && mamba env create -f assets/environment.yml |