- evan.biederstedt at gmail
Highlights
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edlibR Public
R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).
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gapmap Public
gapmap: Functions for Drawing Gapped Cluster Heatmaps with ggplot2
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single-cell-curation Public
Forked from chanzuckerberg/single-cell-curationCode and documentation for the curation of cellxgene datasets
Python MIT License UpdatedFeb 20, 2023 -
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RMTstat Public
Forked from patperry/r-rmtstatAn R package for distributions from random matrix theory
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array-mid Public
Get middle element in an N-element array (either left, right, or both elements if N is even)
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code Public
Forked from rust-in-action/codeSource code for the book Rust in Action
Rust UpdatedOct 29, 2021 -
kMerificator Public
Forked from AlexanderDilthey/kMerificator -
dendsort Public
dendsort: Modular Leaf Ordering Methods for Dendrogram Nodes
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nomenclature Public
Forked from AllenInstitute/nomenclatureThis repository contains code to generate standardized cell type nomenclature from an R "dendrogram".
HTML Other UpdatedSep 28, 2020 -
vitessce-data Public
Forked from vitessce/vitessce-dataUtils for loading HuBMAP data formats
Python MIT License UpdatedSep 2, 2020 -
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paga Public
Forked from theislab/pagaMapping out the coarse-grained connectivity structures of complex manifolds.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 23, 2020 -
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SWIGG_annotate Public
Forked from NCBI-Codeathons/SWIGGA pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
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clockwork Public
Forked from iqbal-lab-org/clockworkCRyPTIC data processing pipelines
HTML MIT License UpdatedNov 21, 2019 -
HLA-LA Public
Forked from DiltheyLab/HLA-LAFast HLA type inference from whole-genome data
C++ GNU General Public License v3.0 UpdatedApr 26, 2019 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedApr 6, 2019 -
sveval Public
Forked from jmonlong/svevalFunctions to compare a SV call sets against a truth set.
R MIT License UpdatedMar 27, 2019 -
hierarchical-hotnet Public
Forked from raphael-group/hierarchical-hotnetHierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
Python Other UpdatedOct 2, 2018 -
hotnet2 Public
Forked from raphael-group/hotnet2HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
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wext Public
Forked from raphael-group/wextA Weighted Exact Test for Mutually Exclusive Mutations in Cancer
Python Other UpdatedSep 30, 2018 -
allelecounter Public
Forked from secastel/allelecounterCounts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.
Python UpdatedSep 21, 2018 -
aFC Public
Forked from secastel/aFCCalculates allelic Fold Change (aFC) using standard input files for fastQTL.
Python UpdatedSep 19, 2018 -
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FSig-SNV Public
Forked from khuranalab/FSig-SNVFSig-SNV: An R package detecting SNV coding and non-coding drivers in cancer
R UpdatedAug 25, 2018