Stars
Joint structural variant and copy number variant caller for HiFi sequencing data
Blazing-Fast Bioinformatic Operations on Python DataFrames
MHConstructor is a high-throughput, haplotype-informed, MHC-specific, short read de novo assembly method intended to further understand the role of MHC.
Precision HLA typing from next-generation sequencing data
Autonomous coding agent right in your IDE, capable of creating/editing files, executing commands, using the browser, and more with your permission every step of the way.
A list of interesting genome browser and genome visualization programs
A local-haplotagging-based small and structural variant caller
Interactive Data Visualization in the browser, from Python
Next-gen fast plotting library running on WGPU using the pygfx rendering engine
Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
Genome modeling and design across all domains of life
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
A modular framework for multimodal cross-cell-type transcriptional regulation models
Project template for Polars Plugins
Specifications of SAM/BAM and related high-throughput sequencing file formats
Deep learning-based structural variant filtering method
A generative world for general-purpose robotics & embodied AI learning.
Web-based tool converts GitHub repository contents into a single formatted text file
Simple, unified 4C8D interface to multiple Generative AI providers
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
SMN1 copy-number and sequence variant analysis from next generation sequencing data